Mercurial > repos > yating-l > hubarchivecreatortest

diff tool_dependencies.xml @ 1:85195e0d4b71 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit b1ae7349f118a0fe7923d765020dfc684cf84116-dirty
author yating-l
date Fri, 29 Sep 2017 13:32:23 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Sep 29 13:32:23 2017 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <!-- Useful for HAC are:
+        - twoBitInfo
+        - sort
+        - bedToBigBed
+        - gff3ToGenePred
+        - gtfToGenePred
+        - genePredToBed
+        - genePredToBigGenePred
+        - faToTwoBit
+        - samtools
+        - pslToBigPsl
+    -->
+    <package name="samtools" version="1.2">
+        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ucsc_hac" version="340">
+        <repository changeset_revision="c6311d9e2443" name="package_ucsc_hac_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ucsc_bigbed" version="340">
+        <repository changeset_revision="0a19f1cdbe8d" name="package_ucsc_bigbed_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="ucsc_bigwig" version="340">      
+        <repository changeset_revision="60be8cdcf7ef" name="package_ucsc_bigwig_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+</tool_dependency>