--- a/hubArchiveCreator.py	Thu Dec 22 15:32:27 2016 -0500
+++ b/hubArchiveCreator.py	Wed Dec 28 17:33:08 2016 -0500
@@ -18,6 +18,7 @@
 # Internal dependencies
 from Bam import Bam
 from BedSimpleRepeats import BedSimpleRepeats
+from BedSpliceJunctions import BedSpliceJunctions
 from Bed import Bed
 from BigWig import BigWig
 from util.Fasta import Fasta
@@ -26,6 +27,7 @@
 from Gtf import Gtf
 from Psl import Psl
 from TrackHub import TrackHub
+from bigPsl import bigPsl
 
 # TODO: Verify each subprocessed dependency is accessible [gff3ToGenePred, genePredToBed, twoBitInfo, faToTwoBit, bedToBigBed, sort
 
@@ -46,9 +48,15 @@
     # Bed4+12 (TrfBig)
     parser.add_argument('--bedSimpleRepeats', action='append', help='Bed4+12 format, using simpleRepeats.as')
 
+    # Bed12+1 (regtools)
+    parser.add_argument('--bedSpliceJunctions', action='append', help='Bed12+1 format, using spliceJunctions.as')
+
     # Generic Bed (Blastx transformed to bed)
     parser.add_argument('--bed', action='append', help='Bed generic format')
 
+    # Bed12+12 (tblastn)
+    parser.add_argument('--bigpsl', action='append', help='bigPsl format')
+
     # BigWig Management
     parser.add_argument('--bigwig', action='append', help='BigWig format')
 
@@ -113,10 +121,12 @@
     array_inputs_bam = args.bam
     array_inputs_bed_generic = args.bed
     array_inputs_bed_simple_repeats = args.bedSimpleRepeats
+    array_inputs_bed_splice_junctions = args.bedSpliceJunctions
     array_inputs_bigwig = args.bigwig
     array_inputs_gff3 = args.gff3
     array_inputs_gtf = args.gtf
     array_inputs_psl = args.psl
+    array_inputs_bigpsl = args.bigpsl
 
     outputFile = args.output
 
@@ -139,9 +149,11 @@
                         (array_inputs_bed_generic, Bed),
                         (array_inputs_bigwig, BigWig),
                         (array_inputs_bed_simple_repeats, BedSimpleRepeats),
+                        (array_inputs_bed_splice_junctions, BedSpliceJunctions),
                         (array_inputs_gff3, Gff3),
                         (array_inputs_gtf, Gtf),
-                        (array_inputs_psl, Psl)]:
+                        (array_inputs_psl, Psl),
+                        (array_inputs_bigpsl, bigPsl)]:
         if inputs:
             all_datatype_dictionary.update(create_ordered_datatype_objects(datatype_class, inputs, inputs_data))