Mercurial > repos > yating-l > hubarchivecreator
diff tool_dependencies.xml @ 52:c66803bff0cc draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
| author | yating-l |
|---|---|
| date | Thu, 11 May 2017 17:21:15 -0400 |
| parents | 364b8db8de17 |
| children | 44059c9e7c02 |
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--- a/tool_dependencies.xml Wed Apr 12 16:51:03 2017 -0400 +++ b/tool_dependencies.xml Thu May 11 17:21:15 2017 -0400 @@ -16,16 +16,16 @@ <package name="samtools" version="1.2"> <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - + <package name="ucsc_tools_340" version="1.0"> <install version="1.0"> <actions_group> <actions architecture="x86_64" os="linux"> <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/ucsc_tools_340.tar.gz</action> <action type="move_directory_files"> - <source_directory>.</source_directory> + <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> - </action> + </action> </actions> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> @@ -34,5 +34,57 @@ </install> <readme>The well known UCSC tools from Jim Kent.</readme> </package> - + + <!-- package ucsc_bigwig is created by Wilson Leung --> + <package name="ucsc_bigwig" version="340"> + <install version="1.0"> + <actions_group> + <actions architecture="x86_64" os="darwin"> + <action sha256sum="a34c57a9fb3c36a984b8fa879a99697c994cd981a1277663d372638e4dec8bb2" type="download_by_url"> + http://old-gep.wustl.edu/~wilson/packages/ucsc_bigwig/ucsc_bigwig_340_macOS_x86_64.tar.gz + </action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + + <actions architecture="x86_64" os="linux"> + <action sha256sum="0d2bd886e312980e0ae58ae912315beeeac612fd1783c959b4eabd62cffd8512" type="download_by_url"> + http://old-gep.wustl.edu/~wilson/packages/ucsc_bigwig/ucsc_bigwig_340_linux_x86_64.tar.gz + </action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + + <!-- Display error message for unsupported OS and CPU architecture --> + <actions> + <action type="shell_command"> + echo "ERROR: This package only supports 64-bit systems running macOS or Linux" + </action> + <action type="shell_command">false</action> + </actions> + + <!-- update $PATH environment variable --> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme> + + This package contains the utilities for constructing + `bigWig files <https://genome.ucsc.edu/goldenpath/help/bigWig.html>`_. + The utilities were created by the + `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_ + at the UCSC Genomics Institute. + + The bigWig file format is designed to store dense continuous datasets + and it is compatible with many genome browsers (e.g., UCSC Genome Browser, + JBrowse, IGV). + + </readme> + </package> </tool_dependency>
