Mercurial > repos > yating-l > hubarchivecreator
diff hubArchiveCreator.xml @ 57:b39dd0b5a166 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
| author | yating-l |
|---|---|
| date | Fri, 30 Jun 2017 14:49:14 -0400 |
| parents | ba9997c847dc |
| children | 583431485006 |
line wrap: on
line diff
--- a/hubArchiveCreator.xml Fri Jun 02 17:28:01 2017 -0400 +++ b/hubArchiveCreator.xml Fri Jun 30 14:49:14 2017 -0400 @@ -73,7 +73,8 @@ #set track_color = str($f.formatChoice.track_color) #set group_name = str($g.group_name) #set longLabel = str($f.formatChoice.longLabel) - #set extra_data_dict = {"track_color": $track_color, + #set extra_data_dict = {"database": "", + "track_color": $track_color, "group_name": $group_name, "long_label": $longLabel} @@ -109,11 +110,15 @@ #end if #if $f.formatChoice.bedChoice.bed_select == "bed_blast_alignment_option" --bedBlastAlignments $f.formatChoice.bedChoice.BED_blast_alignment + #set database = str($f.formatChoice.bedChoice.database) + #silent extra_data_dict.update({"database": $database}) #silent $prepare_json($f.formatChoice.bedChoice.BED_blast_alignment, $index_track_final, extra_data_dict) #end if #if $f.formatChoice.bedChoice.bed_select == "bed_blat_alignment_option" --bigpsl $f.formatChoice.bedChoice.BED_blat_alignment + #set database = str($f.formatChoice.bedChoice.database) + #silent extra_data_dict.update({"database": $database}) #silent $prepare_json($f.formatChoice.bedChoice.BED_blat_alignment, $index_track_final, extra_data_dict) #end if @@ -264,6 +269,12 @@ type="data" label="Bed Blast Alignments (Bed12+12) File" /> + <param name="database" type="select" label="Protein database"> + <option value="NCBI" selected="true">NCBI</option> + <option value="Swiss-Prot">Swiss-Prot</option> + <option value="FlyBase">FlyBase</option> + <option value="Others">Others</option> + </param> </when> <when value="bed_blat_alignment_option"> <param @@ -272,6 +283,10 @@ type="data" label="Bed BLAT Alignments (bigPsl) File" /> + <param name="database" type="select" label="mRNA database"> + <option value="NCBI" selected="true">NCBI</option> + <option value="Others">Others</option> + </param> </when> </conditional> <param name="longLabel" type="text" size="30" label="Track name" />