Mercurial > repos > yating-l > hubarchivecreator
diff hubArchiveCreator.xml @ 54:4a58094b051e draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 754b3f960221a68b90f9cddd98a1c3dd324d4d4e-dirty
| author | yating-l |
|---|---|
| date | Tue, 16 May 2017 18:09:00 -0400 |
| parents | c66803bff0cc |
| children | ba9997c847dc |
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--- a/hubArchiveCreator.xml Thu May 11 17:27:15 2017 -0400 +++ b/hubArchiveCreator.xml Tue May 16 18:09:00 2017 -0400 @@ -91,6 +91,11 @@ #silent $prepare_json($f.formatChoice.bedChoice.BED, $index_track_final, extra_data_dict) #end if + #if $f.formatChoice.bedChoice.bed_select == "bed_cytoBand" + --cytoBand $f.formatChoice.bedChoice.BED_cytoBand + #silent $prepare_json($f.formatChoice.bedChoice.BED_cytoBand, $index_track_final, + extra_data_dict) + #end if #if $f.formatChoice.bedChoice.bed_select == "bed_simple_repeats_option" --bedSimpleRepeats $f.formatChoice.bedChoice.BED_simple_repeats #silent $prepare_json($f.formatChoice.bedChoice.BED_simple_repeats, $index_track_final, @@ -206,6 +211,7 @@ <conditional name="bedChoice"> <param name="bed_select" type="select" label="Bed Choice"> <option value="bed_generic" selected="true">BED Generic (bed3+)</option> + <option value="bed_cytoBand">cytoBand Track (bed4)</option> <option value="bed_simple_repeats_option">BED Simple repeat (bed4+12 / simpleRepeat.as)</option> <option value="bed_splice_junctions_option">BED Splice junctions (bed12+1 / spliceJunctions.as)</option> <option value="bed_blast_alignment_option">Blast alignments (bed12+12 / bigPsl.as)</option> @@ -220,6 +226,14 @@ /> </when> + <when value="bed_cytoBand"> + <param + format="bed" + name="BED_cytoBand" + type="data" + label="cytoBand Track (Bed4)" + /> + </when> <when value="bed_simple_repeats_option"> <param format="bed"