Mercurial > repos > yating-l > hubarchivecreator

comparison Bed.py @ 57:b39dd0b5a166 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
author yating-l
date Fri, 30 Jun 2017 14:49:14 -0400
parents c66803bff0cc
children a0fc8379223c
comparison
equal deleted inserted replaced
56:04cc7c2e7b47 57:b39dd0b5a166
24 self.name_bed_generic = self.data_bed_generic["name"] 24 self.name_bed_generic = self.data_bed_generic["name"]
25 self.priority = self.data_bed_generic["order_index"] 25 self.priority = self.data_bed_generic["order_index"]
26 self.track_color = self.data_bed_generic["track_color"] 26 self.track_color = self.data_bed_generic["track_color"]
27 # TODO: Think about how to avoid repetition of the group_name everywhere 27 # TODO: Think about how to avoid repetition of the group_name everywhere
28 self.group_name = self.data_bed_generic["group_name"] 28 self.group_name = self.data_bed_generic["group_name"]
29 self.database = self.data_bed_generic["database"]
29 if self.data_bed_generic["long_label"]: 30 if self.data_bed_generic["long_label"]:
30 self.long_label = self.data_bed_generic["long_label"] 31 self.long_label = self.data_bed_generic["long_label"]
31 else: 32 else:
32 self.long_label = self.name_bed_generic 33 self.long_label = self.name_bed_generic
33 34
49 track_name=trackName, 50 track_name=trackName,
50 long_label=self.long_label, track_type='bigBed', visibility='dense', 51 long_label=self.long_label, track_type='bigBed', visibility='dense',
51 priority=self.priority, 52 priority=self.priority,
52 track_file=myBigBedFilePath, 53 track_file=myBigBedFilePath,
53 track_color=self.track_color, 54 track_color=self.track_color,
54 group_name=self.group_name) 55 group_name=self.group_name,
56 database=self.database)
55 57
56 # dataURL = "tracks/%s" % trackName 58 # dataURL = "tracks/%s" % trackName
57 # 59 #
58 # trackDb = TrackDb( 60 # trackDb = TrackDb(
59 # trackName=trackName, 61 # trackName=trackName,