Mercurial > repos > yating-l > hubarchivecreator

comparison BedSimpleRepeats.py @ 58:a0fc8379223c draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697
author yating-l
date Fri, 30 Jun 2017 15:44:17 -0400
parents b39dd0b5a166
children
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57:b39dd0b5a166 58:a0fc8379223c
41 with open(myBigBedFilePath, 'w') as bigBedFile: 41 with open(myBigBedFilePath, 'w') as bigBedFile:
42 subtools.bedToBigBed(sortedBedFile.name, 42 subtools.bedToBigBed(sortedBedFile.name,
43 self.chromSizesFile.name, 43 self.chromSizesFile.name,
44 bigBedFile.name, 44 bigBedFile.name,
45 typeOption='bed4+12', 45 typeOption='bed4+12',
46 autoSql=auto_sql_option 46 autoSql=auto_sql_option,
47 extraIndex='name'
47 ) 48 )
48 49
49 # Create the Track Object 50 # Create the Track Object
50 self.createTrack(file_path=trackName, 51 self.createTrack(file_path=trackName,
51 track_name=trackName, 52 track_name=trackName,