Mercurial > repos > yating-l > hubarchivecreator

comparison Bed.py @ 58:a0fc8379223c draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697
author yating-l
date Fri, 30 Jun 2017 15:44:17 -0400
parents b39dd0b5a166
children 4c4e8941feda
comparison
equal deleted inserted replaced
57:b39dd0b5a166 58:a0fc8379223c
41 41
42 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName) 42 myBigBedFilePath = os.path.join(self.myTrackFolderPath, trackName)
43 with open(myBigBedFilePath, 'w') as self.bigBedFile: 43 with open(myBigBedFilePath, 'w') as self.bigBedFile:
44 subtools.bedToBigBed(self.sortedBedFile.name, 44 subtools.bedToBigBed(self.sortedBedFile.name,
45 self.chromSizesFile.name, 45 self.chromSizesFile.name,
46 self.bigBedFile.name) 46 self.bigBedFile.name,
47 extraIndex='name'
48 )
47 49
48 # Create the Track Object 50 # Create the Track Object
49 self.createTrack(file_path=trackName, 51 self.createTrack(file_path=trackName,
50 track_name=trackName, 52 track_name=trackName,
51 long_label=self.long_label, track_type='bigBed', visibility='dense', 53 long_label=self.long_label, track_type='bigBed', visibility='dense',