Mercurial > repos > yating-l > hubarchivecreator

comparison cytoBand.py @ 62:4c4e8941feda draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
author yating-l
date Mon, 10 Jul 2017 17:06:11 -0400
parents b39dd0b5a166
children
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61:68aeb6482069 62:4c4e8941feda
39 39
40 with open(myBigBedFilePath, 'w') as bigBedFile: 40 with open(myBigBedFilePath, 'w') as bigBedFile:
41 subtools.bedToBigBed(sortedBedFile.name, 41 subtools.bedToBigBed(sortedBedFile.name,
42 self.chromSizesFile.name, 42 self.chromSizesFile.name,
43 bigBedFile.name, 43 bigBedFile.name,
44 typeOption='bed4', 44 typeOption='bed4+1',
45 tab='True',
45 autoSql=auto_sql_option) 46 autoSql=auto_sql_option)
46 47
47 # Create the Track Object 48 # Create the Track Object
48 self.createTrack(file_path=trackName, 49 self.createTrack(file_path=trackName,
49 track_name='cytoBandIdeo', 50 track_name='cytoBandIdeo',