Mercurial > repos > yating-l > gonramp_apollo_tools

comparison apolloUserManager.py @ 2:4be6fcac4bf2 draft default tip

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planemo upload for repository https://github.com/Yating-L/suite_gonramp_apollo.git commit 5367a00befb467f162d1870edb91f9face72e894
author yating-l
date Wed, 29 Nov 2017 15:39:32 -0500
parents 78af01d73add
children
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1:78af01d73add 2:4be6fcac4bf2
46 logging.debug('JSON parameters: %s\n\n', json.dumps(reader.args)) 46 logging.debug('JSON parameters: %s\n\n', json.dumps(reader.args))
47 47
48 # Set up apollo 48 # Set up apollo
49 apollo = ApolloInstance(apollo_host, apollo_admin_user, toolDirectory) 49 apollo = ApolloInstance(apollo_host, apollo_admin_user, toolDirectory)
50 apollo.manageApolloUser(operations_dictionary) 50 apollo.manageApolloUser(operations_dictionary)
51 51 outHtml(outputFile, apollo_host)
52 logging.info('#### Apollo User Manager: Congratulation! ####\n') 52 logging.info('#### Apollo User Manager: Congratulation! ####\n')
53 53
54 def outHtml(outputFile, host_name):
55 with open(outputFile, 'w') as htmlfile:
56 htmlstr = 'The Apollo User Manager has done with operations on Apollo: <br>'
57 jbrowse_hub = '<li><a href = "%s" target="_blank">View JBrowse Hub on Apollo</a></li>' % host_name
58 htmlstr += jbrowse_hub
59 htmlfile.write(htmlstr)
54 60
55 61
56 if __name__ == "__main__": 62 if __name__ == "__main__":
57 main(sys.argv) 63 main(sys.argv)