Mercurial > repos > yating-l > gbtofasta

comparison gbToFasta.xml @ 6:97499dcb77fa draft

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planemo upload commit d860eb554edd28f07d8586e7fb2599514937873a
author yating-l
date Mon, 06 Nov 2017 15:28:55 -0500
parents e195691d3e71
children 57e30c6c0aa4
comparison
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5:e195691d3e71 6:97499dcb77fa
46 <outputs> 46 <outputs>
47 <data format="fasta" name="outputfa" label="${tool.name} on ${on_string}:fasta"></data> 47 <data format="fasta" name="outputfa" label="${tool.name} on ${on_string}:fasta"></data>
48 <data format="tabular" name="outputcds" label="${tool.name} on ${on_string}:cds"> 48 <data format="tabular" name="outputcds" label="${tool.name} on ${on_string}:cds">
49 <filter>cds == "yes"</filter> 49 <filter>cds == "yes"</filter>
50 </data> 50 </data>
51 <collection name="trix_index" type="list" label="Trix index"> 51 <collection name="trix_index" type="list" label="${tool.name} on ${on_string}:Trix index">
52 <filter>trix == "yes"</filter> 52 <filter>trix == "yes"</filter>
53 <data name="index_ix" format="txt" from_work_dir="output.ix"/> 53 <data name="index_ix" format="txt" from_work_dir="output.ix"/>
54 <data name="index_ixx" format="txt" from_work_dir="output.ixx" /> 54 <data name="index_ixx" format="txt" from_work_dir="output.ixx" />
55 </collection> 55 </collection>
56 </outputs> 56 </outputs>
57 <tests> 57 <tests>
58 <test> 58 <test>
59 <param name="gbfile" value="Gallus_gallus_RefSeq.gb" /> 59 <param name="gbfile" value="Gallus_gallus_RefSeq.gb" />
60 <param name="cds" value="yes" /> 60 <param name="cds" value="yes" />
61 <param name="trix" value="yes" />
61 <output name="outputfa" value="Gallus_gallus_RefSeq.fa" /> 62 <output name="outputfa" value="Gallus_gallus_RefSeq.fa" />
62 <output name="outputcds" value="Gallus_gallus_RefSeq.cds" /> 63 <output name="outputcds" value="Gallus_gallus_RefSeq.cds" />
63 <output name="index_ix" value="Gallus_gallus_RefSeq.ix" /> 64 <output_collection name="trix_index" type="list">
65 <element name="index_ix" value="Gallus_gallus_RefSeq.ix" />
66 <element name="index_ixx" value="Gallus_gallus_RefSeq.ixx" />
67 </output_collection>
64 </test> 68 </test>
69
65 <test> 70 <test>
66 <param name="gbfile" value="Gallus_gallus_RefSeq.gb" /> 71 <param name="gbfile" value="Gallus_gallus_RefSeq.gb" />
67 <param name="cds" value="no" /> 72 <param name="cds" value="no" />
73 <param name="trix" value="no" />
68 <output name="outputfa" value="Gallus_gallus_RefSeq.fa" /> 74 <output name="outputfa" value="Gallus_gallus_RefSeq.fa" />
69 <output name="index_ix" value="Gallus_gallus_RefSeq.ix" />
70 </test> 75 </test>
71 </tests> 76 </tests>
72 <help> 77 <help>
73 <![CDATA[ 78 <![CDATA[
74 gbToFasta 79 gbToFasta