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comparison bcftools_view.xml @ 21:e7cd97e24810 draft

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author wrtz
date Fri, 15 Jan 2016 11:45:10 -0500
parents bb21cedd0dc9
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20:5eb82bfa9e2b 21:e7cd97e24810
1 <tool id="bcftools_view" name="BCFtools view" version="1.0.0"> 1 <tool id="bcftools_view" name="BCFtools view" version="1.0.0">
2 <description>Convert, view, subset, and filter VCF/BCF files</description> 2 <description>Convert, view, subset, and filter VCF/BCF files</description>
3 <requirements>
4 <requirement type="package" version="1.3">bcftools</requirement>
5 </requirements>
3 <command> 6 <command>
4 #if str( $input_file_index ) != "None": 7 #if str( $input_file_index ) != "None":
5 ln -s -f $input input_file.${input.ext} &amp;&amp; 8 ln -s -f $input input_file.${input.ext} &amp;&amp;
6 ln -s -f $input_file_index input_file.${input.ext}.tbi &amp;&amp; 9 ln -s -f $input_file_index input_file.${input.ext}.tbi &amp;&amp;
7 #end if 10 #end if