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comparison bcftools_norm.xml @ 25:dfba0f0b3edd draft

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author wrtz
date Fri, 15 Jan 2016 11:48:11 -0500
parents 22d009d35145
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24:73e23f3ff1f3 25:dfba0f0b3edd
1 <tool id="bcftools_norm" name="BCFtools norm" version="1.0.0"> 1 <tool id="bcftools_norm" name="BCFtools norm" version="1.0.0">
2 <description>Left-align and normalize indels, check if REF alleles match reference, change multiallelic format</description> 2 <description>Left-align and normalize indels, check if REF alleles match reference, change multiallelic format</description>
3 <requirements>
4 <requirement type="package" version="1.3">bcftools</requirement>
5 </requirements>
3 <command> 6 <command>
4 #if str( $input_file_index ) != "None": 7 #if str( $input_file_index ) != "None":
5 ln -s -f $input input_file.${input.ext} &amp;&amp; 8 ln -s -f $input input_file.${input.ext} &amp;&amp;
6 ln -s -f $input_file_index input_file.${input.ext}.tbi &amp;&amp; 9 ln -s -f $input_file_index input_file.${input.ext}.tbi &amp;&amp;
7 #end if 10 #end if