Mercurial > repos > wrtz > bcftools
comparison bgzip.xml @ 17:c34371f08c6f draft
Uploaded
| author | wrtz |
|---|---|
| date | Thu, 14 Jan 2016 17:51:28 -0500 |
| parents | |
| children | 91a6f019e1a9 |
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| 16:bb21cedd0dc9 | 17:c34371f08c6f |
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| 1 <tool id="bgzip" name="Bgzip" version="1.0.0"> | |
| 2 <description>Run bgzip compression on file </description> | |
| 3 <command> | |
| 4 bgzip -c -f $input> $output | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input" type="data" label="Input file" /> | |
| 8 </inputs> | |
| 9 <outputs> | |
| 10 <data name="output" format="bgzip" label="${tool.name} on ${on_string}"> | |
| 11 <change_format> | |
| 12 <when input="$input.ext" value="vcf" format="vcf_bgzip" /> | |
| 13 </change_format> | |
| 14 </data> | |
| 15 </outputs> | |
| 16 <help> | |
| 17 **About this tool** | |
| 18 | |
| 19 **Bgzip**: Block compression/decompression utility. Outputs compressed (bgzipped) version of input file. | |
| 20 | |
| 21 More info here: http://www.htslib.org/doc/tabix.html | |
| 22 </help> | |
| 23 </tool> |