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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 3a3a04c0b20310f8d4fbc5be27559353c7e2cc61
author ufz
date Tue, 10 Feb 2026 16:49:16 +0000
parents 4c5df4c1cefb
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4c5df4c1cefb planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 43dc684f71cc7a61bf241d804c7ed95bbeef1001
ufz
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1 # OMERO suite toolbox
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9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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3 ## Set up user credentials on Galaxy to connect to other omero instance
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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5 To enable users to set their credentials for this tool,
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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6 make sure the file `config/user_preferences_extra.yml` has the following section:
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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8 ```
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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9 omero_account:
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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10 description: Your OMERO instance connection credentials
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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11 inputs:
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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12 - name: username
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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13 label: Username
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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14 type: text
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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15 required: False
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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16 - name: password
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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17 label: Password
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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18 type: password
9d5b183051b1 planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 54b50795912de3f2508cfcfc6911d71a94b34c56
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19 required: False