Mercurial > repos > ufz > omero_get_value
diff omero_get_value.xml @ 3:6ae415d8821c draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit 233f0e70cb20a02ec8530dbcfd5c7e70eef74476
| author | ufz |
|---|---|
| date | Mon, 26 Jan 2026 15:04:30 +0000 |
| parents | 86428b102388 |
| children |
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--- a/omero_get_value.xml Fri Jun 13 20:46:09 2025 +0000 +++ b/omero_get_value.xml Mon Jan 26 15:04:30 2026 +0000 @@ -2,16 +2,24 @@ <description> with ezomero </description> <macros> <import>macros.xml</import> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> </macros> <xrefs> <xref type="bio.tools">omero</xref> </xrefs> <expand macro="ezomero_requirements"/> + <required_files> + <include path="connect_omero.py" /> + <include path="omero_get_value.py" /> + </required_files> <command detect_errors="exit_code"><![CDATA[ + #if $test_username != "" + export OMERO_USER="$test_username" && + export OMERO_PASSWORD="$test_password" && + #end if + mkdir output; python '$__tool_directory__/omero_get_value.py' - --credential-file '$credentials' @HOST_PORT@ --obj_type '$obj_type' #if $ids_input.ids_format == "values" @@ -19,11 +27,9 @@ #else --ids_path '$ids_input.ids_path' #end if + @SESSION_ID@ --out_dir ./output/ ]]></command> - <configfiles> - <expand macro="credentials"/> - </configfiles> <inputs> <expand macro="host_port"/> <param argument="obj_type" type="select" optional="false" label="Type of object to fetch:"> @@ -155,4 +161,4 @@ <citations> <citation type="doi">10.1038/nmeth.1896</citation> </citations> -</tool> +</tool> \ No newline at end of file