Mercurial > repos > ufz > genomad_build_database

annotate data_manager_conf.xml @ 0:74d51566155d draft default tip

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planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
author ufz
date Fri, 13 Jun 2025 20:39:57 +0000
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74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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1 <data_managers>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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2 <data_manager tool_file="data_manager/genomad_datamanager.xml" id="genomad_build_database">
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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3 <data_table name="genomad">
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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4 <output>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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5 <column name="value"/>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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6 <column name="name"/>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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7 <column name="path" output_ref="out_file">
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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8 <move type="directory">
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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9 <source>${path}</source>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomad_databases/${value}</target>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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11 </move>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomad_databases/${value}</value_translation>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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13 <value_translation type="function">abspath</value_translation>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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14 </column>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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15 </output>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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16 </data_table>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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17 </data_manager>
74d51566155d planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_genomad commit fea5692fe5258a520e43b739c5aa4d109756123f
ufz
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18 </data_managers>