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comparison star_fusion.xml @ 10:43d9d711800a draft default tip

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Adding pysam requirement to star_fusion tool.
author trinity_ctat
date Mon, 18 Dec 2017 12:38:04 -0500
parents a53fe0b09d21
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9:a53fe0b09d21 10:43d9d711800a
1 <tool id="star_fusion" name="Star Fusion" version="1.0.0" profile="17.05"> 1 <tool id="star_fusion" name="Star Fusion" version="1.0.0" profile="17.05">
2 <description>Fusion-finding Pipeline Using the STAR Aligner</description> 2 <description>Fusion-finding Pipeline Using the STAR Aligner</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.1.0">star-fusion</requirement> 4 <requirement type="package" version="1.1.0">star-fusion</requirement>
5 <requirement type="package" version="1.3">samtools</requirement>
5 </requirements> 6 </requirements>
6 <command detect_errors="default"> 7 <command detect_errors="default">
7 <![CDATA[ 8 <![CDATA[
8 STAR-Fusion 9 STAR-Fusion
9 --genome_lib_dir "${genome_ref_lib.fields.path}" 10 --genome_lib_dir "${genome_ref_lib.fields.path}"