Mercurial > repos > trinity_ctat > discasm
comparison discasm.xml @ 3:931d2156d896 draft default tip
Adding gmap_fusion tool.
| author | trinity_ctat |
|---|---|
| date | Mon, 22 Jan 2018 16:18:42 -0500 |
| parents | 10a6c3d5a022 |
| children |
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| 2:10a6c3d5a022 | 3:931d2156d896 |
|---|---|
| 1 <tool id="discasm" name="DISCASM" version="1.0.0" profile="17.05"> | 1 <tool id="discasm" name="DISCASM" version="1.0.0" profile="17.05"> |
| 2 <description>Discordant and Unmapped Read De novo Transcriptome Assembly</description> | 2 <description>Discordant and Unmapped Read De novo Transcriptome Assembly</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <!-- Added following requirement, but it does not exist in conda yet. --> | |
| 5 <requirement type="package" version="0.1.2">discasm</requirement> | 4 <requirement type="package" version="0.1.2">discasm</requirement> |
| 6 </requirements> | 5 </requirements> |
| 7 <!-- | |
| 8 <requirement type="set_environment">TRINTOOLS</requirement> | |
| 9 echo $TRINTOOLS | |
| 10 /N/dc2/projects/galaxyshared/trinity/third_party_applications | |
| 11 But this is only on github. Looks like we need to create a conda package for this one. | |
| 12 --> | |
| 13 <command detect_errors="default"> | 6 <command detect_errors="default"> |
| 14 DISCASM | 7 DISCASM |
| 15 --aligned_bam $bam | 8 --aligned_bam $bam |
| 16 --chimeric_junctions $chimeric | 9 --chimeric_junctions $chimeric |
| 17 --left_fq $left_input | 10 --left_fq $left_input |