# HG changeset patch
# User trinity_ctat
# Date 1529959108 14400
# Node ID 777b35c8ee3e4aac678db48f0ba51df6dad78ab7
# Parent  8291ea96690fc2924fb3a7486393ef0840561d04
Trying newer trinity

diff -r 8291ea96690f -r 777b35c8ee3e ctat_trinity_rnaseq.xml
--- a/ctat_trinity_rnaseq.xml	Fri Apr 13 08:00:01 2018 -0400
+++ b/ctat_trinity_rnaseq.xml	Mon Jun 25 16:38:28 2018 -0400
@@ -4,16 +4,15 @@
         later development/maintenance by (in chronological order)
             Brian Haas, Ben Fulton, Cicada Dennis 
     -->
-    <description>De novo assembly of RNA-Seq data using Trinity 2.4.0</description>
+    <description>De novo assembly of RNA-Seq data using Trinity</description>
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
         <requirement type="package">subprocess32</requirement>
-        <requirement type="package">samtools</requirement>
         <requirement type="package">bzip2</requirement>
         <requirement type="package" version="1.3.0">rsem</requirement>
         <requirement type="package" version="3">bioconductor-edger</requirement>
         <requirement type="package" version="2">bioconductor-qvalue</requirement>
-        <requirement type="package" version="2.5.1">trinity</requirement>
+        <requirement type="package" version="2.6.6">trinity</requirement>
     </requirements>
     <command detect_errors="default">
       <![CDATA[
@@ -134,7 +133,7 @@
         </test>
     </tests>
     <help>
-This instance is running Trinity version 2.4.0 and uses the following command:
+This instance runs Trinity with the following command:
 
 	 Trinity --max_memory 31G --CPU 4 --seqType seq_type --single singlefile or --left left_file --right right_file