# HG changeset patch
# User trinity_ctat
# Date 1530716562 14400
# Node ID ec7eb887ab61719257c11f0bd2e44f59c33c5ce9
# Parent  669ac85ee4f26925af00ad122f2243bbade1d6f6
New ctat_star_fusion.xml to use new bioconda recipe.

diff -r 669ac85ee4f2 -r ec7eb887ab61 ctat_star_fusion.xml
--- a/ctat_star_fusion.xml	Tue Jun 19 16:01:36 2018 -0400
+++ b/ctat_star_fusion.xml	Wed Jul 04 11:02:42 2018 -0400
@@ -2,25 +2,7 @@
 
     <description>Fusion-finding Pipeline Using the STAR Aligner</description>
     <requirements>
-	<requirement type="package" version="1.3.2">star-fusion</requirement>
-        <!-- Added the following, because the 2.6 version of star does not
-        work with 1.3.2 star-fusion.
-        -->
-	<requirement type="package" version="2.5.4a">star</requirement>
-        <!--
-        FIX - the following may get added to the Star-Fusion recipe, but
-        are not in it at the current time.
-        -->
-	<requirement type="package">perl-carp</requirement>
-	<requirement type="package">perl-json-xs</requirement>
-	<requirement type="package">perl-io-gzip</requirement>
-        <requirement type="package">samtools</requirement>
-        <!--
-        FIX - If samtools is really a requirement, shouldn't it be a star-fusion dependency?
-        Also, the current version of samtools is up to 1.8.3. 1.3.0 is quite old. Why that version?
-        I am trying it without pinning to a particular version.
-        <requirement type="package" version="1.3">samtools</requirement>
-        -->
+	<requirement type="package" version="1.4.0">star-fusion</requirement>
     </requirements>
     <!-- Using command's detect_errors instead of below.
     <stdio>