# HG changeset patch
# User trinity_ctat
# Date 1530806195 14400
# Node ID 3e375492af68511d4e80717aedf6ade56d0c1319
# Parent  ec7eb887ab61719257c11f0bd2e44f59c33c5ce9
Uploaded

diff -r ec7eb887ab61 -r 3e375492af68 ctat_star_fusion.xml
--- a/ctat_star_fusion.xml	Wed Jul 04 11:02:42 2018 -0400
+++ b/ctat_star_fusion.xml	Thu Jul 05 11:56:35 2018 -0400
@@ -36,8 +36,8 @@
 
     <outputs>
       <data format="txt" name="starfusion_log" label="${tool.name} on ${on_string}: log" from_work_dir="subdir/Log.out"/>
-      <data format="bam" name="aligned_bam" label="${tool.name} on ${on_string}: Aligned Bam" from_work_dir="subdir/Aligned.sortedByCoord.out.bam"/>
-      <data format="tabular" name="candidates" label="${tool.name} on ${on_string}: Fusion candidates" from_work_dir="subdir/star-fusion.fusion_candidates.final.abridged"/>
+      <data format="bam" name="aligned_bam" label="${tool.name} on ${on_string}: Aligned Bam" from_work_dir="subdir/std.STAR.bam"/>
+      <data format="tabular" name="candidates" label="${tool.name} on ${on_string}: Fusion candidates" from_work_dir="subdir/star-fusion.fusion_predictions.abridged.tsv"/>
       <data format="tabular" name="chimeric_junc" label="${tool.name} on ${on_string}: Chimeric.out.junction" from_work_dir="subdir/Chimeric.out.junction"/> 
     </outputs>
     <tests>