Mercurial > repos > trinity_ctat > ctat_star_fusion
comparison ctat_star_fusion.xml @ 10:fe24128ef413 draft default tip
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| author | trinity_ctat |
|---|---|
| date | Sun, 08 Jul 2018 16:18:09 -0400 |
| parents | 690a6696ce11 |
| children |
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| 9:690a6696ce11 | 10:fe24128ef413 |
|---|---|
| 35 </param> | 35 </param> |
| 36 </inputs> | 36 </inputs> |
| 37 | 37 |
| 38 <outputs> | 38 <outputs> |
| 39 <data format="txt" name="starfusion_log" label="${tool.name} on ${on_string}: log" from_work_dir="subdir/Log.out"/> | 39 <data format="txt" name="starfusion_log" label="${tool.name} on ${on_string}: log" from_work_dir="subdir/Log.out"/> |
| 40 <data format="bam" name="aligned_bam" label="${tool.name} on ${on_string}: Aligned Bam" from_work_dir="subdir/Aligned.sortedByCoord.out.bam"/> | 40 <data format="bam" name="aligned_bam" label="${tool.name} on ${on_string}: Aligned Bam" from_work_dir="subdir/std.STAR.bam"/> |
| 41 <data format="tabular" name="candidates" label="${tool.name} on ${on_string}: Fusion candidates" from_work_dir="subdir/star-fusion.fusion_candidates.final.abridged"/> | 41 <data format="tabular" name="candidates" label="${tool.name} on ${on_string}: Fusion candidates" from_work_dir="subdir/star-fusion.fusion_predictions.abridged.tsv"/> |
| 42 <data format="tabular" name="chimeric_junc" label="${tool.name} on ${on_string}: Chimeric.out.junction" from_work_dir="subdir/Chimeric.out.junction"/> | 42 <data format="tabular" name="chimeric_junc" label="${tool.name} on ${on_string}: Chimeric.out.junction" from_work_dir="subdir/std.Chimeric.out.junction"/> |
| 43 </outputs> | 43 </outputs> |
| 44 <tests> | 44 <tests> |
| 45 <test> | 45 <test> |
| 46 <param name="left_input" value="StarFusion/reads_1.fq.gz" /> | 46 <param name="left_input" value="StarFusion/reads_1.fq.gz" /> |
| 47 <param name="right_input" value="StarFusion/reads_2.fq.gz" /> | 47 <param name="right_input" value="StarFusion/reads_2.fq.gz" /> |