Mercurial > repos > trinity_ctat > ctat_mutations

comparison ctat_mutations.xml @ 5:4bcee0138ac9 draft

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author trinity_ctat
date Sat, 10 Nov 2018 11:40:42 -0500
parents 9e6395f093d2
children 7cf8f5889a4d
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4:9e6395f093d2 5:4bcee0138ac9
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.0.1">ctat-mutations</requirement> 4 <requirement type="package" version="2.0.1">ctat-mutations</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="default"> 6 <command detect_errors="default">
7 <![CDATA[ 7 <![CDATA[
8 python ctat-mutations/ctat_mutations \ 8 python ctat_mutations \
9 --plot \ 9 --plot \
10 --out_dir varcalling.outdir \ 10 --out_dir varcalling.outdir \
11 --threads 8 \ 11 --threads 8 \
12 --variant_filtering_mode GATK \ 12 --variant_filtering_mode GATK \
13 --left "$left" \ 13 --left "$left" \