# HG changeset patch
# User trinity_ctat
# Date 1529600703 14400
# Node ID 6dc7ef1d304ba23f11387c2ab5714b5bc6d69146
# Parent  f90f62998d96adb6fa7957d018235c627c20cfe1
Uploaded

diff -r f90f62998d96 -r 6dc7ef1d304b data_manager/add_ctat_lncrna_annotations.py
--- a/data_manager/add_ctat_lncrna_annotations.py	Thu Jun 21 12:52:02 2018 -0400
+++ b/data_manager/add_ctat_lncrna_annotations.py	Thu Jun 21 13:05:03 2018 -0400
@@ -208,16 +208,16 @@
     args = parser.parse_args()
 
     # print "Arguments are parsed."
-    print "\ndownload_location is {:s}".format(str(args.download_location))
+    print "\ndownload_location is {:s}".format(str(_CTAT_lncrnaDownload_URL))
     print "display_name is {:s}".format(str(args.display_name))
     print "destination_path is {:s}\n".format(str(args.destination_path))
     root_annotations_dirname = None
     # FIX - Prob don't need annotations_was_downloaded. Not doing anything with it.
     # But it indicates success downloading the annotations, so maybe should be checking it.
     annotations_was_downloaded = False
-    if (args.download_location != ""):
+    if (_CTAT_lncrnaDownload_URL != ""):
         annotations_directory, root_annotations_dirname, annotations_was_downloaded = \
-            download_annotations(src_location=args.download_location, \
+            download_annotations(src_location=_CTAT_lncrnaDownload_URL, \
                            destination=args.destination_path, \
                            force_download=args.force_download)
     else: