Mercurial > repos > trinity_ctat > ctat_analyze_differential_expression

comparison ctat_analyze_differential_expression.xml @ 1:03155bc11cff draft

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Making sure tools are up to date.
author trinity_ctat
date Thu, 12 Apr 2018 10:48:38 -0400
parents 6a8dadcd45e3
children ab08b6af7710
comparison
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0:6a8dadcd45e3 1:03155bc11cff
11 <requirement type="package" version="2">bioconductor-qvalue</requirement> 11 <requirement type="package" version="2">bioconductor-qvalue</requirement>
12 <requirement type="package" version="2.5.1">trinity</requirement> 12 <requirement type="package" version="2.5.1">trinity</requirement>
13 </requirements> 13 </requirements>
14 <command detect_errors="exit_code"> 14 <command detect_errors="exit_code">
15 <![CDATA[ 15 <![CDATA[
16 python $__tool_directory__/ctat_analyze_diff_exp_wrapper.py $EdgeRTarGz $TMM_Matrix_FPKM $Pvalue $Cvalue 16 python $__tool_directory__/ctat_analyze_differential_expression.py $EdgeRTarGz $TMM_Matrix_FPKM $Pvalue $Cvalue
17 ]]> 17 ]]>
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <param name="EdgeRTarGz" label="EdgeR tar gz file" type="data" format="txt"/> 20 <param name="EdgeRTarGz" label="EdgeR tar gz file" type="data" format="txt"/>
21 <param name="TMM_Matrix_FPKM" label="TMM Normalized FPKM matrix" type="data" format="tabular" /> 21 <param name="TMM_Matrix_FPKM" label="TMM Normalized FPKM matrix" type="data" format="tabular" />