Mercurial > repos > trinity_ctat > analyze_differential_expression

comparison analyze_diff_exp.xml @ 11:f0163fe3a7e1 draft default tip

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Adding requirement to analyze_diff_exp.
author trinity_ctat
date Fri, 06 Oct 2017 14:38:19 -0400
parents da02ebc6a91c
children
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10:da02ebc6a91c 11:f0163fe3a7e1
2 2
3 <description>Analyze differential expression</description> 3 <description>Analyze differential expression</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7">python</requirement> 5 <requirement type="package" version="2.7">python</requirement>
6 <requirement type="package" version="1.3.0">rsem</requirement> 6 <requirement type="package" version="1.3.0">rsem</requirement>
7 <requirement type="package" version="3">bioconductor-qvalue</requirement> 7 <requirement type="package" version="2">bioconductor-qvalue</requirement>
8 <requirement type="package">trinity</requirement> 8 <requirement type="package">trinity</requirement>
9 </requirements> 9 </requirements>
10 <command detect_errors="exit_code"> 10 <command detect_errors="exit_code">
11 <![CDATA[ 11 <![CDATA[
12 python $__tool_directory__/analyze_diff_exp_wrapper.py $EdgeRTarGz $TMM_Matrix_FPKM $Pvalue $Cvalue 12 python $__tool_directory__/analyze_diff_exp_wrapper.py $EdgeRTarGz $TMM_Matrix_FPKM $Pvalue $Cvalue