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comparison abundance_estimation_to_matrix.xml @ 10:640b67a604f7 draft default tip

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Adding profile info and exit code behavior. Making version numbers consistent. Upping test number.
author trinity_ctat
date Fri, 06 Oct 2017 10:59:18 -0400
parents 4c943e196e8f
children
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9:4c943e196e8f 10:640b67a604f7
1 <tool id="abundance_estimation_to_matrix" name="abundance_estimation_to_matrix" version="1.0.0"> 1 <tool id="abundance_estimation_to_matrix" name="abundance_estimation_to_matrix" version="1.0.0" profile="17.05">
2 2
3 <description>Join RSEM estimates from multiple samples into a single matrix</description> 3 <description>Join RSEM estimates from multiple samples into a single matrix</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7">python</requirement> 5 <requirement type="package" version="2.7">python</requirement>
6 <requirement type="package" version="1.3.0">rsem</requirement> 6 <requirement type="package" version="1.3.0">rsem</requirement>
7 <requirement type="package">trinity</requirement> 7 <requirement type="package">trinity</requirement>
8 </requirements> 8 </requirements>
9 <command> 9 <command detect_errors="exit_code">
10 <![CDATA[ 10 <![CDATA[
11 python $__tool_directory__/abundance_estimation_to_matrix_wrapper.py 11 python $__tool_directory__/abundance_estimation_to_matrix_wrapper.py
12 #for $q in $RSEM_samples 12 #for $q in $RSEM_samples
13 ${q.file} "${q.column_label}" 13 ${q.file} "${q.column_label}"
14 #end for 14 #end for