Mercurial > repos > trinity_ctat > abundance_estimation_to_matrix

comparison abundance_estimation_to_matrix.xml @ 3:9c24629b1268 draft

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Changing input format type.
author trinity_ctat
date Fri, 29 Sep 2017 11:15:56 -0400
parents 9ed9b7f33ad9
children e1cd59f4cddf
comparison
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2:9ed9b7f33ad9 3:9c24629b1268
14 14
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 17
18 <repeat name="RSEM_samples" title="RSEM abundance estimates for samples"> 18 <repeat name="RSEM_samples" title="RSEM abundance estimates for samples">
19 <param name="file" label="Add file" type="data" format="txt"/> 19 <param name="file" label="Add file" type="data" />
20 <param name="column_label" label="column label" type="text" /> 20 <param name="column_label" label="column label" type="text" />
21 </repeat> 21 </repeat>
22 22
23 </inputs> 23 </inputs>
24 <outputs> 24 <outputs>
25 <data format="txt" name="counts_matrix" label="${tool.name} on ${on_string}: Counts Matrix" from_work_dir="matrix.counts.matrix"/> 25 <data format="tabular" name="counts_matrix" label="${tool.name} on ${on_string}: Counts Matrix" from_work_dir="matrix.counts.matrix"/>
26 <data format="txt" name="tmm_expr_matrix" label="${tool.name} on ${on_string}: TMM EXPR Matrix" from_work_dir="matrix.TMM.EXPR.matrix"/> 26 <data format="tabular" name="tmm_expr_matrix" label="${tool.name} on ${on_string}: TMM EXPR Matrix" from_work_dir="matrix.TMM.EXPR.matrix"/>
27 </outputs> 27 </outputs>
28 <tests> 28 <tests>
29 <test> 29 <test>
30 <repeat name="RSEM_samples"> 30 <repeat name="RSEM_samples">
31 <param name="file" value="Sp_ds.RSEM.genes.results" /> 31 <param name="file" value="Sp_ds.RSEM.genes.results" />