Mercurial > repos > tomnl > spectral_matching

diff create_sqlite_db.R @ 24:a2ded8b99a80 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 04023134d8f28e85927ca293373c506484149ead-dirty
author tomnl
date Sat, 02 Jun 2018 05:09:33 -0400
parents bb013638f63d
children cc71a2f7d9fe
line wrap: on
line diff
--- a/create_sqlite_db.R	Fri Jun 01 15:23:41 2018 -0400
+++ b/create_sqlite_db.R	Sat Jun 02 05:09:33 2018 -0400
@@ -213,7 +213,7 @@
 
 if (is.null(xset)){
   DBI::dbWriteTable(con, name='xset_classes', value=xa@xcmsSet@phenoData, row.names=TRUE)
-  add_probmetab(opt$probmetab_result, xset,  con)
+  add_probmetab(opt$probmetab_result, xa@xcmsSet,  con)
 }else{
 
   DBI::dbWriteTable(con, name='xset_classes', value=xset@phenoData, row.names=TRUE)