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comparison macros.xml @ 1:d2cbfd026dec draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 2e847122cf605951c334858455fc1d3ebdb189e9-dirty
author tomnl
date Tue, 27 Mar 2018 05:39:48 -0400
parents efb634ef71fd
children 428e5f61850b
comparison
equal deleted inserted replaced
0:efb634ef71fd 1:d2cbfd026dec
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.4.5" >bioconductor-mspurity</requirement> 5 <requirement type="package" version="1.5.2" >bioconductor-mspurity</requirement>
6 <requirement type="package" version="1.4.4" >r-optparse</requirement> 6 <requirement type="package" version="1.4.4" >r-optparse</requirement>
7 <yield /> 7 <yield />
8 </requirements> 8 </requirements>
9 9
10 </xml> 10 </xml>
52 </when> 52 </when>
53 </conditional> 53 </conditional>
54 </xml> 54 </xml>
55 55
56 56
57 57 <xml name="camera_xcms">
58 58 <param name="camera_xcms" type="select" label="Use CAMERA object or XCMS object from RData?"
59 59 help="Within the RData file there should be either an XCMS object called xset or a CAMERA object called
60 xa (or both). The XCMS object is nested within the CAMERA object so either can be used">
61 <option value="xcms" selected="true" >XCMS (xset)</option>
62 <option value="camera" >CAMERA (xa)</option>
63 </param>
64 </xml>
60 65
61 66
62 <xml name="fileload"> 67 <xml name="fileload">
63 <conditional name="file_load_conditional"> 68 <conditional name="file_load_conditional">
64 <param name="file_load_select" type="select" label="Resubmit your dataset" 69 <param name="file_load_select" type="select" label="Resubmit your dataset"
76 for processing" /> 81 for processing" />
77 </when> 82 </when>
78 </conditional> 83 </conditional>
79 </xml> 84 </xml>
80 85
81 86 <xml name="grp_peaklist">
87 <conditional name="grp_peaklist_opt">
88 <param name="grp_peaklist_opt" type="select" label="Add a different grouped peaklist to database?">
89 <option value="yes" >Provide group peaklist </option>
90 <option value="no" selected="true">Use default grouped peaklist</option>
91 </param>
92 <when value="no">
93 </when>
94 <when value="yes">
95 <param type="data" name="grp_peaklist" label="grouped peaklist"
96 help="User supplied grouped peaklist to add to the database (if additional columns required e.g.
97 CAMERA annotations" format="tsv,tabular"/>
98 </when>
99 </conditional>
100 </xml>
82 101
83 <xml name="citations"> 102 <xml name="citations">
84 <citations> 103 <citations>
85 <citation type="doi">10.1021/acs.analchem.6b04358</citation> 104 <citation type="doi">10.1021/acs.analchem.6b04358</citation>
86 <yield /> 105 <yield />