Mercurial > repos > tomnl > nmrml2isa
diff nmrml2isa-galaxy/README.md @ 0:4f6a6a2db3b1 draft
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| author | tomnl |
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| date | Fri, 03 Feb 2017 10:54:21 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/nmrml2isa-galaxy/README.md Fri Feb 03 10:54:21 2017 -0500 @@ -0,0 +1,32 @@ +nmrml2isa for galaxy +=============== + +[](http://bioconda.github.io/recipes/nmrml2isa/README.html) [](https://travis-ci.org/ISA-tools/nmrml2isa-galaxy) + +This is a Galaxy wrapper for the nmrml2isa python package tool. + +- Full documentation: http://2isa.readthedocs.io/en/latest/ +- Python PyPi package: https://pypi.python.org/pypi/mzml2isa/ +- Github code: https://github.com/ISA-tools/mzml2isa + +nmrml2isa is a program that allows you to convert metabolomic studies in .mzML format to the open ISA-Tab standard supported by the MetaboLights database. + +Installation +=============== + +The recommended installation is by means of the toolshed (https://toolshed.g2.bx.psu.edu/). Dependencies should be installed automatically when using Galaxy version >= 16.10. + +The dependencies are dealt with Bioconda. To ensure that Bioconda is working check to make sure the following settings are in the config/galaxy.ini file. + +``` +# dependencies before each job runs. +conda_auto_install = True +# Set to True to instruct Galaxy to install Conda from the web automatically +# if it cannot find a local copy and conda_exec is not configured. +conda_auto_init = True +``` + + +Licence +=============== +GNU General Public License v3 (GPLv3)
