Mercurial > repos > tomnl > mspurity_spectralmatching

comparison spectralMatching.xml @ 13:8dd98b0f83af draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 4f88143938cc198436c2691443832c87e2c31cd0
author tomnl
date Tue, 24 Sep 2019 07:49:51 -0400
parents e131f2fb0f97
children 499c26566a7a
comparison
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12:e131f2fb0f97 13:8dd98b0f83af
172 172
173 <section name="Query" title="Query spectra input and filters" expanded="True"> 173 <section name="Query" title="Query spectra input and filters" expanded="True">
174 <expand macro="sm_input" ql='Query' ql_shrt = "q" user="True" mspuritydatalib="False" msp="False" 174 <expand macro="sm_input" ql='Query' ql_shrt = "q" user="True" mspuritydatalib="False" msp="False"
175 help="Query SQLite database - in the standard XCMS msPurity workflow - the output 175 help="Query SQLite database - in the standard XCMS msPurity workflow - the output
176 of msPurity.createDatabase should be used here. However any SQLite database 176 of msPurity.createDatabase should be used here. However any SQLite database
177 following the schema of xxx can be used as input"/> 177 following the schema of as https://bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-spectral-database-vignette.html can be used as input"/>
178 <expand macro="filters" ql="Query" ql_shrt="q"/> 178 <expand macro="filters" ql="Query" ql_shrt="q"/>
179 </section> 179 </section>
180 180
181 <section name="Library" title="Library spectra input and filters" expanded="True"> 181 <section name="Library" title="Library spectra input and filters" expanded="True">
182 <expand macro="sm_input" ql='Library' ql_shrt = "l" user="False" mspuritydatalib="True" msp="False" 182 <expand macro="sm_input" ql='Library' ql_shrt = "l" user="False" mspuritydatalib="True" msp="False"
183 help="Library SQLite database - in the standard XCMS msPurity workflow - a default 183 help="Library SQLite database - in the standard XCMS msPurity workflow - a default
184 database of MassBank, HMDB, LipidBlast and GNPS is used. However any SQLite 184 database of MassBank, HMDB, LipidBlast and GNPS is used. However any SQLite
185 database following the schema of xxx can be used as input"/> 185 database following the schema of https://bioconductor.org/packages/release/bioc/vignettes/msPurity/inst/doc/msPurity-spectral-database-vignette.html can be used as input"/>
186 <expand macro="filters" ql="Library" ql_shrt="l"/> 186 <expand macro="filters" ql="Library" ql_shrt="l"/>
187 </section> 187 </section>
188 188
189 <section name="General" title="General arguments" expanded="False"> 189 <section name="General" title="General arguments" expanded="False">
190 <conditional name="rttol_cond"> 190 <conditional name="rttol_cond">