Mercurial > repos > tomnl > anticipated_purity_lcms

diff anticipated_purity_lcms.xml @ 1:c64891642e41 draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 2e847122cf605951c334858455fc1d3ebdb189e9-dirty
author tomnl
date Tue, 27 Mar 2018 05:32:57 -0400
parents dc00b7222a3c
children f5f04305ff9f
line wrap: on
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--- a/anticipated_purity_lcms.xml	Mon Mar 05 10:01:25 2018 -0500
+++ b/anticipated_purity_lcms.xml	Tue Mar 27 05:32:57 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="anticipated_purity_lcms" name="anticipated_purity_lcms" version="0.0.2">
+<tool id="anticipated_purity_lcms" name="anticipated_purity_lcms" version="0.0.3">
         <description>Calculate the anticipated precursor ion purity from a LC-MS XCMS dataset.
     </description>
     <macros>
@@ -127,12 +127,7 @@
                 <option value="purityFWmean" >FW mean</option>
         </param>
 
-        <param name="camera_xcms" type="select" label="Use CAMERA object or XCMS object from RData?"
-               help="Within the RData file there should be either an XCMS object called xset or a CAMERA object called
-                      xa (or both). The XCMS object is nested within the CAMERA object so either can be used">
-                <option value="xcms" selected="true" >XCMS (xset)</option>
-                <option value="camera" >CAMERA (xa)</option>
-        </param>
+        <expand macro="camera_xcms" />
 
         <param name="raw_rt_columns" type="boolean" label="Has the raw retention time been tracked within the peaks?"
                help="Only applicable when using retention time correction with obiwarp. When obiwarp is used
@@ -205,4 +200,4 @@
 
     ]]></help>
     <expand macro="citations" />
-</tool>
\ No newline at end of file
+</tool>