Mercurial > repos > tomnl > anticipated_purity_lcms

comparison create_sqlite_db.R @ 23:b48824808bab draft

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planemo upload for repository https://github.com/computational-metabolomics/mspurity-galaxy commit 04023134d8f28e85927ca293373c506484149ead-dirty
author tomnl
date Fri, 01 Jun 2018 15:31:47 -0400
parents c8b34df46dae
children 1d0ae59b2771
comparison
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22:c8b34df46dae 23:b48824808bab
205 } 205 }
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210 add_extra_table_elucidation('metfrag_results', opt$metfrag_result, con, filter_Score=0.6, filter_Rank=NA) 210 add_extra_table_elucidation('metfrag_results', opt$metfrag_result, con)
211 add_extra_table_elucidation('sirius_csifingerid_results', opt$sirius_csifingerid_result, con, filter_Score=NA, filter_Rank=5) 211 add_extra_table_elucidation('sirius_csifingerid_results', opt$sirius_csifingerid_result, con)
212 212
213 213
214 if (is.null(xset)){ 214 if (is.null(xset)){
215 DBI::dbWriteTable(con, name='xset_classes', value=xa@xcmsSet@phenoData, row.names=TRUE) 215 DBI::dbWriteTable(con, name='xset_classes', value=xa@xcmsSet@phenoData, row.names=TRUE)
216 add_probmetab(opt$probmetab_result, xset, con) 216 add_probmetab(opt$probmetab_result, xset, con)