Mercurial > repos > tduigou > seq_to_db

comparison save_to_db.py @ 2:d77ff06f5dc9 draft default tip

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planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
author tduigou
date Wed, 16 Jul 2025 14:51:52 +0000
parents 5db1c2b9edb8
children
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1:5db1c2b9edb8 2:d77ff06f5dc9
207 207
208 if use_json: 208 if use_json:
209 if not args.json_conf: 209 if not args.json_conf:
210 raise ValueError("You must provide --json_conf when --use_json_paramers is 'true'") 210 raise ValueError("You must provide --json_conf when --use_json_paramers is 'true'")
211 with open(args.json_conf, "r") as f: 211 with open(args.json_conf, "r") as f:
212 full_config = json.load(f) 212 config_params = json.load(f)
213 config_params = full_config["seq_to_db_param"]
214 if config_params.get("execution", "") == "false": 213 if config_params.get("execution", "") == "false":
215 print("Execution blocked by config (execution = false)") 214 print("Execution blocked by config (execution = false)")
216 return 215 return
217 else: 216 else:
218 config_params = { 217 config_params = {