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planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit d8cc8b87fdb0374745b5420f2da7f08ae905c222-dirty
author tduigou
date Wed, 16 Jul 2025 14:51:52 +0000
parents 5db1c2b9edb8
children
comparison
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1:5db1c2b9edb8 2:d77ff06f5dc9
1 { 1 {
2 "summary": { 2 "summary": {
3 "num_errors": 0, 3 "num_errors": 0,
4 "num_failures": 1, 4 "num_failures": 0,
5 "num_skips": 0, 5 "num_skips": 0,
6 "num_tests": 2 6 "num_tests": 1
7 }, 7 },
8 "tests": [ 8 "tests": [
9 { 9 {
10 "data": { 10 "data": {
11 "inputs": { 11 "inputs": {
12 "genbank_files": { 12 "genbank_files": {
13 "id": "5035e3bab9835d6e", 13 "id": "c483dc6e4815613d",
14 "src": "hdca" 14 "src": "hdca"
15 }, 15 },
16 "json_generating": false, 16 "json_generating": false,
17 "json_use|json_conf": { 17 "json_use|json_conf": {
18 "id": "48861e2bb98fa8f3", 18 "id": "aa2843b1b277b7a7",
19 "src": "hda" 19 "src": "hda"
20 }, 20 },
21 "json_use|use_json_paramers": true 21 "json_use|use_json_paramers": true
22 }, 22 },
23 "job": { 23 "job": {
24 "command_line": "python '/home/rkhaled/galaxytools/tools/seq_to_db/save_to_db.py' --input '/tmp/tmp_qydb9xn/files/8/c/6/dataset_8c6c4607-b545-411e-8565-3c6ca3472443.dat,/tmp/tmp_qydb9xn/files/e/b/6/dataset_eb604a05-357c-45df-ae5a-81ddb65244e3.dat,/tmp/tmp_qydb9xn/files/3/6/6/dataset_366741cf-94b2-42de-8d64-7f00e58563e0.dat,/tmp/tmp_qydb9xn/files/f/f/1/dataset_ff11bb17-ed2d-415e-96cf-e5ed35c7d997.dat,/tmp/tmp_qydb9xn/files/5/8/6/dataset_5861c673-e009-436c-9020-a23df5356851.dat' --use_json_paramers 'true' --json_conf '/tmp/tmp_qydb9xn/files/8/c/a/dataset_8ca49aab-9732-422b-bd76-9975c97f5f2a.dat' --output '/tmp/tmp_qydb9xn/job_working_directory/000/7/outputs/dataset_b5f885e2-68c2-4441-9ade-922799b2cfd6.dat' --file_name_mapping '/tmp/tmp_qydb9xn/files/8/c/6/dataset_8c6c4607-b545-411e-8565-3c6ca3472443.dat:p7_L7Ae-Weiss.gb,/tmp/tmp_qydb9xn/files/e/b/6/dataset_eb604a05-357c-45df-ae5a-81ddb65244e3.dat:p6_Nt-IgKLsequence.gb,/tmp/tmp_qydb9xn/files/3/6/6/dataset_366741cf-94b2-42de-8d64-7f00e58563e0.dat:p6_Kozak-ATG.gb,/tmp/tmp_qydb9xn/files/f/f/1/dataset_ff11bb17-ed2d-415e-96cf-e5ed35c7d997.dat:p4_Kt-L7Ae-Weiss.gb,/tmp/tmp_qydb9xn/files/5/8/6/dataset_5861c673-e009-436c-9020-a23df5356851.dat:HC_Amp_ccdB.gb' --json_generating 'false' --json_output 'XXXX' && echo \"DEBUG\" && cat \"XXXX\"", 24 "command_line": "python '/home/rkhaled/galaxytools/tools/seq_to_db/save_to_db.py' --input '/tmp/tmpac_768cd/files/d/4/1/dataset_d41458b9-ed0a-4b73-83bd-c0b05e03f3ca.dat,/tmp/tmpac_768cd/files/3/2/3/dataset_3234dfd4-c4b6-42fb-b254-e23532f04d7a.dat,/tmp/tmpac_768cd/files/5/c/3/dataset_5c34ee15-4ade-4ee7-9068-607cee72ba4f.dat,/tmp/tmpac_768cd/files/7/9/7/dataset_7970a203-ec8d-40ea-845f-eaa66f55ac7b.dat,/tmp/tmpac_768cd/files/b/c/5/dataset_bc5a286c-1a56-4506-90e2-1687f93f24d0.dat' --use_json_paramers 'true' --json_conf '/tmp/tmpac_768cd/files/5/7/3/dataset_57302268-f98c-4e9d-9812-c2e5bda507f5.dat' --output '/tmp/tmpac_768cd/job_working_directory/000/7/outputs/dataset_8bb5f859-22ca-4d7f-bb07-cfbb3ca3a04f.dat' --file_name_mapping '/tmp/tmpac_768cd/files/d/4/1/dataset_d41458b9-ed0a-4b73-83bd-c0b05e03f3ca.dat:p7_L7Ae-Weiss.gb,/tmp/tmpac_768cd/files/3/2/3/dataset_3234dfd4-c4b6-42fb-b254-e23532f04d7a.dat:p6_Nt-IgKLsequence.gb,/tmp/tmpac_768cd/files/5/c/3/dataset_5c34ee15-4ade-4ee7-9068-607cee72ba4f.dat:p6_Kozak-ATG.gb,/tmp/tmpac_768cd/files/7/9/7/dataset_7970a203-ec8d-40ea-845f-eaa66f55ac7b.dat:p4_Kt-L7Ae-Weiss.gb,/tmp/tmpac_768cd/files/b/c/5/dataset_bc5a286c-1a56-4506-90e2-1687f93f24d0.dat:HC_Amp_ccdB.gb' --json_generating 'false' --json_output 'XXXX'",
25 "command_version": "", 25 "command_version": "",
26 "copied_from_job_id": null, 26 "copied_from_job_id": null,
27 "create_time": "2025-07-11T14:13:47.541606", 27 "create_time": "2025-07-16T14:50:01.488998",
28 "dependencies": [], 28 "dependencies": [],
29 "exit_code": 1, 29 "exit_code": 0,
30 "external_id": "133184", 30 "external_id": "166724",
31 "galaxy_version": "25.0", 31 "galaxy_version": "25.0",
32 "handler": null, 32 "handler": null,
33 "history_id": "5035e3bab9835d6e", 33 "history_id": "c483dc6e4815613d",
34 "id": "cf8d16af14dc294f", 34 "id": "bcb3b45a1cc4a671",
35 "inputs": { 35 "inputs": {
36 "genbank_files1": { 36 "genbank_files1": {
37 "id": "5035e3bab9835d6e", 37 "id": "c483dc6e4815613d",
38 "src": "hda", 38 "src": "hda",
39 "uuid": "8c6c4607-b545-411e-8565-3c6ca3472443" 39 "uuid": "d41458b9-ed0a-4b73-83bd-c0b05e03f3ca"
40 }, 40 },
41 "genbank_files2": { 41 "genbank_files2": {
42 "id": "6a141869249298e9", 42 "id": "c4d3b2f0c36d8241",
43 "src": "hda", 43 "src": "hda",
44 "uuid": "eb604a05-357c-45df-ae5a-81ddb65244e3" 44 "uuid": "3234dfd4-c4b6-42fb-b254-e23532f04d7a"
45 }, 45 },
46 "genbank_files3": { 46 "genbank_files3": {
47 "id": "8ca00df555c44d56", 47 "id": "69de8fd4747f3c3b",
48 "src": "hda", 48 "src": "hda",
49 "uuid": "366741cf-94b2-42de-8d64-7f00e58563e0" 49 "uuid": "5c34ee15-4ade-4ee7-9068-607cee72ba4f"
50 }, 50 },
51 "genbank_files4": { 51 "genbank_files4": {
52 "id": "be795001aeb7b4a0", 52 "id": "941f1e1f3cfa391c",
53 "src": "hda", 53 "src": "hda",
54 "uuid": "ff11bb17-ed2d-415e-96cf-e5ed35c7d997" 54 "uuid": "7970a203-ec8d-40ea-845f-eaa66f55ac7b"
55 }, 55 },
56 "genbank_files5": { 56 "genbank_files5": {
57 "id": "8fbddce2c6d1629d", 57 "id": "3a97944c68e74177",
58 "src": "hda", 58 "src": "hda",
59 "uuid": "5861c673-e009-436c-9020-a23df5356851" 59 "uuid": "bc5a286c-1a56-4506-90e2-1687f93f24d0"
60 }, 60 },
61 "json_use|json_conf": { 61 "json_use|json_conf": {
62 "id": "48861e2bb98fa8f3", 62 "id": "aa2843b1b277b7a7",
63 "src": "hda", 63 "src": "hda",
64 "uuid": "8ca49aab-9732-422b-bd76-9975c97f5f2a" 64 "uuid": "57302268-f98c-4e9d-9812-c2e5bda507f5"
65 }
66 },
67 "job_messages": [
68 {
69 "code_desc": "",
70 "desc": "Fatal error: Exit code 1 ()",
71 "error_level": 3.0,
72 "exit_code": 1,
73 "type": "exit_code"
74 }
75 ],
76 "job_metrics": [],
77 "job_runner_name": null,
78 "job_stderr": "",
79 "job_stdout": "",
80 "model_class": "Job",
81 "output_collections": {},
82 "outputs": {
83 "output": {
84 "id": "cf8d16af14dc294f",
85 "src": "hda",
86 "uuid": "b5f885e2-68c2-4441-9ade-922799b2cfd6"
87 }
88 },
89 "params": {
90 "__input_ext": "\"input\"",
91 "chromInfo": "\"/tmp/tmp_qydb9xn/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
92 "dbkey": "\"?\"",
93 "genbank_files": "{\"values\": [{\"id\": 1, \"src\": \"hdca\"}]}",
94 "json_generating": "false",
95 "json_use": "{\"__current_case__\": 1, \"json_conf\": {\"values\": [{\"id\": 6, \"src\": \"hda\"}]}, \"use_json_paramers\": true}"
96 },
97 "state": "error",
98 "stderr": "cat: XXXX: No such file or directory\n",
99 "stdout": "Execution blocked by config (execution = false)\nDEBUG\n",
100 "tool_id": "seq_to_db",
101 "tool_stderr": "cat: XXXX: No such file or directory\n",
102 "tool_stdout": "Execution blocked by config (execution = false)\nDEBUG\n",
103 "update_time": "2025-07-11T14:13:54.198241",
104 "user_email": "planemo@galaxyproject.org",
105 "user_id": "5035e3bab9835d6e"
106 },
107 "output_problems": [
108 "Job in error state.. tool_id: seq_to_db, exit_code: 1, stderr: cat: XXXX: No such file or directory\n.",
109 "Job in error state.. tool_id: seq_to_db, exit_code: 1, stderr: cat: XXXX: No such file or directory\n."
110 ],
111 "status": "failure",
112 "test_index": 1,
113 "time_seconds": 28.040581941604614,
114 "tool_id": "seq_to_db",
115 "tool_version": "0.2.0+galaxy1"
116 },
117 "has_data": true,
118 "id": "seq_to_db-1"
119 },
120 {
121 "data": {
122 "inputs": {
123 "genbank_files": {
124 "id": "6a141869249298e9",
125 "src": "hdca"
126 },
127 "json_use|annotation_column": "annotation",
128 "json_use|db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
129 "json_use|execution_enable": true,
130 "json_use|fragment_column": "fragment",
131 "json_use|sequence_column": "sequence",
132 "json_use|table": "sample",
133 "json_use|use_json_paramers": false
134 },
135 "job": {
136 "command_line": "python '/home/rkhaled/galaxytools/tools/seq_to_db/save_to_db.py' --input '/tmp/tmp_qydb9xn/files/e/2/4/dataset_e2429fd0-5082-415d-869b-2f7c67516829.dat,/tmp/tmp_qydb9xn/files/8/5/2/dataset_85256206-1030-4b72-bc8d-786951caba8a.dat,/tmp/tmp_qydb9xn/files/d/d/a/dataset_ddae9a40-9b20-4439-8022-532bb18a89a9.dat,/tmp/tmp_qydb9xn/files/1/b/2/dataset_1b2fd1a2-9b4f-42f0-a66c-6d7f5b6d935f.dat,/tmp/tmp_qydb9xn/files/3/a/9/dataset_3a93ffcc-6958-4761-a4c3-1f6e5b64bbb6.dat' --use_json_paramers 'false' --sequence_column 'sequence' --annotation_column 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --execution_enable 'true' --output '/tmp/tmp_qydb9xn/job_working_directory/000/13/outputs/dataset_c78df7ec-701b-4f3e-8081-d63aa4a4ba90.dat' --file_name_mapping '/tmp/tmp_qydb9xn/files/e/2/4/dataset_e2429fd0-5082-415d-869b-2f7c67516829.dat:p7_L7Ae-Weiss.gb,/tmp/tmp_qydb9xn/files/8/5/2/dataset_85256206-1030-4b72-bc8d-786951caba8a.dat:p6_Nt-IgKLsequence.gb,/tmp/tmp_qydb9xn/files/d/d/a/dataset_ddae9a40-9b20-4439-8022-532bb18a89a9.dat:p6_Kozak-ATG.gb,/tmp/tmp_qydb9xn/files/1/b/2/dataset_1b2fd1a2-9b4f-42f0-a66c-6d7f5b6d935f.dat:p4_Kt-L7Ae-Weiss.gb,/tmp/tmp_qydb9xn/files/3/a/9/dataset_3a93ffcc-6958-4761-a4c3-1f6e5b64bbb6.dat:HC_Amp_ccdB.gb' --json_generating 'true' --json_output '/tmp/tmp_qydb9xn/job_working_directory/000/13/outputs/dataset_705e4a52-0582-42c5-afba-22b1cbe3eb9f.dat' && echo \"DEBUG\" && cat \"/tmp/tmp_qydb9xn/job_working_directory/000/13/outputs/dataset_705e4a52-0582-42c5-afba-22b1cbe3eb9f.dat\"",
137 "command_version": "",
138 "copied_from_job_id": null,
139 "create_time": "2025-07-11T14:14:15.037467",
140 "dependencies": [
141 {
142 "cacheable": false,
143 "dependency_resolver": {
144 "auto_init": true,
145 "auto_install": true,
146 "can_uninstall_dependencies": true,
147 "ensure_channels": "conda-forge,bioconda",
148 "model_class": "CondaDependencyResolver",
149 "prefix": "/home/rkhaled/miniconda3",
150 "read_only": false,
151 "resolver_type": "conda",
152 "resolves_simple_dependencies": true,
153 "use_local": false,
154 "versionless": false
155 },
156 "dependency_type": "conda",
157 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-6494927f0d17ef089d943514f10e32b6b4b401affaea78704675d8f812704966",
158 "exact": true,
159 "model_class": "MergedCondaDependency",
160 "name": "pandas",
161 "version": "2.2.3"
162 },
163 {
164 "cacheable": false,
165 "dependency_resolver": {
166 "auto_init": true,
167 "auto_install": true,
168 "can_uninstall_dependencies": true,
169 "ensure_channels": "conda-forge,bioconda",
170 "model_class": "CondaDependencyResolver",
171 "prefix": "/home/rkhaled/miniconda3",
172 "read_only": false,
173 "resolver_type": "conda",
174 "resolves_simple_dependencies": true,
175 "use_local": false,
176 "versionless": false
177 },
178 "dependency_type": "conda",
179 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-6494927f0d17ef089d943514f10e32b6b4b401affaea78704675d8f812704966",
180 "exact": true,
181 "model_class": "MergedCondaDependency",
182 "name": "sqlalchemy",
183 "version": "2.0.40"
184 },
185 {
186 "cacheable": false,
187 "dependency_resolver": {
188 "auto_init": true,
189 "auto_install": true,
190 "can_uninstall_dependencies": true,
191 "ensure_channels": "conda-forge,bioconda",
192 "model_class": "CondaDependencyResolver",
193 "prefix": "/home/rkhaled/miniconda3",
194 "read_only": false,
195 "resolver_type": "conda",
196 "resolves_simple_dependencies": true,
197 "use_local": false,
198 "versionless": false
199 },
200 "dependency_type": "conda",
201 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-6494927f0d17ef089d943514f10e32b6b4b401affaea78704675d8f812704966",
202 "exact": true,
203 "model_class": "MergedCondaDependency",
204 "name": "psycopg2",
205 "version": "2.9.9"
206 }
207 ],
208 "exit_code": 0,
209 "external_id": "133675",
210 "galaxy_version": "25.0",
211 "handler": null,
212 "history_id": "6a141869249298e9",
213 "id": "179da9a21af79ae5",
214 "inputs": {
215 "genbank_files1": {
216 "id": "e058757b81e0ebed",
217 "src": "hda",
218 "uuid": "e2429fd0-5082-415d-869b-2f7c67516829"
219 },
220 "genbank_files2": {
221 "id": "10993b807f8c1a73",
222 "src": "hda",
223 "uuid": "85256206-1030-4b72-bc8d-786951caba8a"
224 },
225 "genbank_files3": {
226 "id": "d964653210776bae",
227 "src": "hda",
228 "uuid": "ddae9a40-9b20-4439-8022-532bb18a89a9"
229 },
230 "genbank_files4": {
231 "id": "1187622ddb220809",
232 "src": "hda",
233 "uuid": "1b2fd1a2-9b4f-42f0-a66c-6d7f5b6d935f"
234 },
235 "genbank_files5": {
236 "id": "0ec72b924a1ee71e",
237 "src": "hda",
238 "uuid": "3a93ffcc-6958-4761-a4c3-1f6e5b64bbb6"
239 } 65 }
240 }, 66 },
241 "job_messages": [], 67 "job_messages": [],
242 "job_metrics": [], 68 "job_metrics": [],
243 "job_runner_name": null, 69 "job_runner_name": null,
244 "job_stderr": "", 70 "job_stderr": "",
245 "job_stdout": "", 71 "job_stdout": "",
246 "model_class": "Job", 72 "model_class": "Job",
247 "output_collections": {}, 73 "output_collections": {},
248 "outputs": { 74 "outputs": {
249 "json_output": { 75 "output": {
250 "id": "8d85a3e6aa2938f6", 76 "id": "bcb3b45a1cc4a671",
251 "src": "hda", 77 "src": "hda",
252 "uuid": "705e4a52-0582-42c5-afba-22b1cbe3eb9f" 78 "uuid": "8bb5f859-22ca-4d7f-bb07-cfbb3ca3a04f"
253 },
254 "output": {
255 "id": "179da9a21af79ae5",
256 "src": "hda",
257 "uuid": "c78df7ec-701b-4f3e-8081-d63aa4a4ba90"
258 } 79 }
259 }, 80 },
260 "params": { 81 "params": {
261 "__input_ext": "\"input\"", 82 "__input_ext": "\"input\"",
262 "chromInfo": "\"/tmp/tmp_qydb9xn/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", 83 "chromInfo": "\"/tmp/tmpac_768cd/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
263 "dbkey": "\"?\"", 84 "dbkey": "\"?\"",
264 "genbank_files": "{\"values\": [{\"id\": 2, \"src\": \"hdca\"}]}", 85 "genbank_files": "{\"values\": [{\"id\": 1, \"src\": \"hdca\"}]}",
265 "json_generating": "true", 86 "json_generating": "false",
266 "json_use": "{\"__current_case__\": 0, \"annotation_column\": \"annotation\", \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\", \"execution_enable\": true, \"fragment_column\": \"fragment\", \"sequence_column\": \"sequence\", \"table\": \"sample\", \"use_json_paramers\": false}" 87 "json_use": "{\"__current_case__\": 1, \"json_conf\": {\"values\": [{\"id\": 6, \"src\": \"hda\"}]}, \"use_json_paramers\": true}"
267 }, 88 },
268 "state": "ok", 89 "state": "ok",
269 "stderr": "", 90 "stderr": "",
270 "stdout": "JSON configuration written to: /tmp/tmp_qydb9xn/job_working_directory/000/13/outputs/dataset_705e4a52-0582-42c5-afba-22b1cbe3eb9f.dat\nConnected to database.\nProcessing file: dataset_e2429fd0-5082-415d-869b-2f7c67516829.dat(p7_L7Ae-Weiss)\nProcessing file: dataset_85256206-1030-4b72-bc8d-786951caba8a.dat(p6_Nt-IgKLsequence)\nProcessing file: dataset_ddae9a40-9b20-4439-8022-532bb18a89a9.dat(p6_Kozak-ATG)\nProcessing file: dataset_1b2fd1a2-9b4f-42f0-a66c-6d7f5b6d935f.dat(p4_Kt-L7Ae-Weiss)\nProcessing file: dataset_3a93ffcc-6958-4761-a4c3-1f6e5b64bbb6.dat(HC_Amp_ccdB)\nInserted 5 fragments.\nFragment names written to '/tmp/tmp_qydb9xn/job_working_directory/000/13/outputs/dataset_c78df7ec-701b-4f3e-8081-d63aa4a4ba90.dat'.\nDEBUG\n{\n \"table\": \"sample\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\",\n \"fragment_column\": \"fragment\",\n \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"execution\": \"true\"\n}", 91 "stdout": "Connected to database.\nProcessing file: dataset_d41458b9-ed0a-4b73-83bd-c0b05e03f3ca.dat(p7_L7Ae-Weiss)\nProcessing file: dataset_3234dfd4-c4b6-42fb-b254-e23532f04d7a.dat(p6_Nt-IgKLsequence)\nProcessing file: dataset_5c34ee15-4ade-4ee7-9068-607cee72ba4f.dat(p6_Kozak-ATG)\nProcessing file: dataset_7970a203-ec8d-40ea-845f-eaa66f55ac7b.dat(p4_Kt-L7Ae-Weiss)\nProcessing file: dataset_bc5a286c-1a56-4506-90e2-1687f93f24d0.dat(HC_Amp_ccdB)\nInserted 5 fragments.\nFragment names written to '/tmp/tmpac_768cd/job_working_directory/000/7/outputs/dataset_8bb5f859-22ca-4d7f-bb07-cfbb3ca3a04f.dat'.\n",
271 "tool_id": "seq_to_db", 92 "tool_id": "seq_to_db",
272 "tool_stderr": "", 93 "tool_stderr": "",
273 "tool_stdout": "JSON configuration written to: /tmp/tmp_qydb9xn/job_working_directory/000/13/outputs/dataset_705e4a52-0582-42c5-afba-22b1cbe3eb9f.dat\nConnected to database.\nProcessing file: dataset_e2429fd0-5082-415d-869b-2f7c67516829.dat(p7_L7Ae-Weiss)\nProcessing file: dataset_85256206-1030-4b72-bc8d-786951caba8a.dat(p6_Nt-IgKLsequence)\nProcessing file: dataset_ddae9a40-9b20-4439-8022-532bb18a89a9.dat(p6_Kozak-ATG)\nProcessing file: dataset_1b2fd1a2-9b4f-42f0-a66c-6d7f5b6d935f.dat(p4_Kt-L7Ae-Weiss)\nProcessing file: dataset_3a93ffcc-6958-4761-a4c3-1f6e5b64bbb6.dat(HC_Amp_ccdB)\nInserted 5 fragments.\nFragment names written to '/tmp/tmp_qydb9xn/job_working_directory/000/13/outputs/dataset_c78df7ec-701b-4f3e-8081-d63aa4a4ba90.dat'.\nDEBUG\n{\n \"table\": \"sample\",\n \"sequence_column\": \"sequence\",\n \"annotation_column\": \"annotation\",\n \"fragment_column\": \"fragment\",\n \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"execution\": \"true\"\n}", 94 "tool_stdout": "Connected to database.\nProcessing file: dataset_d41458b9-ed0a-4b73-83bd-c0b05e03f3ca.dat(p7_L7Ae-Weiss)\nProcessing file: dataset_3234dfd4-c4b6-42fb-b254-e23532f04d7a.dat(p6_Nt-IgKLsequence)\nProcessing file: dataset_5c34ee15-4ade-4ee7-9068-607cee72ba4f.dat(p6_Kozak-ATG)\nProcessing file: dataset_7970a203-ec8d-40ea-845f-eaa66f55ac7b.dat(p4_Kt-L7Ae-Weiss)\nProcessing file: dataset_bc5a286c-1a56-4506-90e2-1687f93f24d0.dat(HC_Amp_ccdB)\nInserted 5 fragments.\nFragment names written to '/tmp/tmpac_768cd/job_working_directory/000/7/outputs/dataset_8bb5f859-22ca-4d7f-bb07-cfbb3ca3a04f.dat'.\n",
274 "update_time": "2025-07-11T14:14:21.313512", 95 "update_time": "2025-07-16T14:50:07.342567",
275 "user_email": "planemo@galaxyproject.org", 96 "user_email": "planemo@galaxyproject.org",
276 "user_id": "5035e3bab9835d6e" 97 "user_id": "c483dc6e4815613d"
277 }, 98 },
278 "status": "success", 99 "status": "success",
279 "test_index": 2, 100 "test_index": 0,
280 "time_seconds": 26.91756534576416, 101 "time_seconds": 35.08016586303711,
281 "tool_id": "seq_to_db", 102 "tool_id": "seq_to_db",
282 "tool_version": "0.2.0+galaxy1" 103 "tool_version": "0.3.0+galaxy2"
283 }, 104 },
284 "has_data": true, 105 "has_data": true,
285 "id": "seq_to_db-2" 106 "id": "seq_to_db-0"
286 } 107 }
287 ], 108 ],
288 "version": "0.1" 109 "version": "0.1"
289 } 110 }