Mercurial > repos > tduigou > seq_from_db
comparison output.json @ 2:3bb9bbecae97 draft default tip
planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 767392e3136912fa30d1e0786eba789dd77d722c-dirty
| author | tduigou |
|---|---|
| date | Wed, 03 Sep 2025 14:07:14 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 1:54e716c11b71 | 2:3bb9bbecae97 |
|---|---|
| 1 { | |
| 2 "summary": { | |
| 3 "num_errors": 0, | |
| 4 "num_failures": 0, | |
| 5 "num_skips": 0, | |
| 6 "num_tests": 3 | |
| 7 }, | |
| 8 "tests": [ | |
| 9 { | |
| 10 "data": { | |
| 11 "inputs": { | |
| 12 "input": { | |
| 13 "id": "4a322b718ac1c0e2", | |
| 14 "src": "hda" | |
| 15 }, | |
| 16 "json_use|annotation_columns": "annotation", | |
| 17 "json_use|db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", | |
| 18 "json_use|fragment_column": "fragment", | |
| 19 "json_use|sequence_column": "sequence", | |
| 20 "json_use|table": "sample", | |
| 21 "json_use|use_json_paramers": false | |
| 22 }, | |
| 23 "job": { | |
| 24 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/seq_from_db/get_db_info.py' --input '/tmp/tmpk1dzvi78/files/c/1/9/dataset_c19fee65-2ddf-471a-97f2-745ff33b2e2b.dat' --use_json_paramers 'false' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir' --report '/tmp/tmpk1dzvi78/job_working_directory/000/2/outputs/dataset_a220a67a-7465-433f-bf6b-8982cbe6f6c0.dat'", | |
| 25 "command_version": "", | |
| 26 "copied_from_job_id": null, | |
| 27 "create_time": "2025-09-03T14:06:00.424294", | |
| 28 "dependencies": [], | |
| 29 "exit_code": 0, | |
| 30 "external_id": "272095", | |
| 31 "galaxy_version": "25.0", | |
| 32 "handler": null, | |
| 33 "history_id": "4a322b718ac1c0e2", | |
| 34 "id": "1989000e072b2636", | |
| 35 "inputs": { | |
| 36 "input": { | |
| 37 "id": "4a322b718ac1c0e2", | |
| 38 "src": "hda", | |
| 39 "uuid": "c19fee65-2ddf-471a-97f2-745ff33b2e2b" | |
| 40 } | |
| 41 }, | |
| 42 "job_messages": [], | |
| 43 "job_metrics": [], | |
| 44 "job_runner_name": null, | |
| 45 "job_stderr": "", | |
| 46 "job_stdout": "", | |
| 47 "model_class": "Job", | |
| 48 "output_collections": { | |
| 49 "output_gb": { | |
| 50 "id": "4a322b718ac1c0e2", | |
| 51 "src": "hdca" | |
| 52 } | |
| 53 }, | |
| 54 "outputs": { | |
| 55 "__new_primary_file_output_gb|part_A__": { | |
| 56 "id": "692a3006cb4bc1fb", | |
| 57 "src": "hda", | |
| 58 "uuid": "9d1fe7c4-5dec-4419-b058-dc8b5ca2b484" | |
| 59 }, | |
| 60 "__new_primary_file_output_gb|part_B__": { | |
| 61 "id": "5bb9f161ccdcbe3d", | |
| 62 "src": "hda", | |
| 63 "uuid": "a33008d7-817a-48f9-8dfb-eabb78b76674" | |
| 64 }, | |
| 65 "__new_primary_file_output_gb|part_C__": { | |
| 66 "id": "c5357eb6f97cf3a5", | |
| 67 "src": "hda", | |
| 68 "uuid": "d2344e99-b844-43a2-a0aa-bd49fad9717b" | |
| 69 }, | |
| 70 "__new_primary_file_output_gb|part_D__": { | |
| 71 "id": "293d1ae40cf22fe6", | |
| 72 "src": "hda", | |
| 73 "uuid": "05d7eecf-949d-480b-91c1-9d9c47794e09" | |
| 74 }, | |
| 75 "__new_primary_file_output_gb|part_E__": { | |
| 76 "id": "23e4ed60bee4a4b3", | |
| 77 "src": "hda", | |
| 78 "uuid": "62ecbf87-c2a9-48bd-b4fd-7335e1c02dbf" | |
| 79 }, | |
| 80 "__new_primary_file_output_gb|part_F__": { | |
| 81 "id": "79412812e9269933", | |
| 82 "src": "hda", | |
| 83 "uuid": "40e8c7bf-123b-474a-b428-b898dd08381c" | |
| 84 }, | |
| 85 "__new_primary_file_output_gb|part_G__": { | |
| 86 "id": "6d16ab9a203f56a3", | |
| 87 "src": "hda", | |
| 88 "uuid": "27e54c95-e5d5-45d3-bc9d-2850e0a1341e" | |
| 89 }, | |
| 90 "__new_primary_file_output_gb|part_H__": { | |
| 91 "id": "283353e9143f5274", | |
| 92 "src": "hda", | |
| 93 "uuid": "f59a445a-e4c8-4f15-a878-7c25849d9b46" | |
| 94 }, | |
| 95 "__new_primary_file_output_gb|part_I__": { | |
| 96 "id": "e3c978da9b8df39e", | |
| 97 "src": "hda", | |
| 98 "uuid": "f37c3fd1-2d0e-4f41-94ac-6c85d3ee9508" | |
| 99 }, | |
| 100 "__new_primary_file_output_gb|part_J__": { | |
| 101 "id": "12cc97427ff4fb0f", | |
| 102 "src": "hda", | |
| 103 "uuid": "14b3409c-2557-4d34-9872-f9f02b1e9b4a" | |
| 104 }, | |
| 105 "__new_primary_file_output_gb|part_K__": { | |
| 106 "id": "92d876d39ec93068", | |
| 107 "src": "hda", | |
| 108 "uuid": "3b9deade-0417-4fab-b51f-0c6ae5f54ab5" | |
| 109 }, | |
| 110 "__new_primary_file_output_gb|part_L__": { | |
| 111 "id": "93db475889f8ba12", | |
| 112 "src": "hda", | |
| 113 "uuid": "2309a76c-c8ae-4123-a227-f4b6e2ffac42" | |
| 114 }, | |
| 115 "report": { | |
| 116 "id": "1989000e072b2636", | |
| 117 "src": "hda", | |
| 118 "uuid": "a220a67a-7465-433f-bf6b-8982cbe6f6c0" | |
| 119 } | |
| 120 }, | |
| 121 "params": { | |
| 122 "__input_ext": "\"input\"", | |
| 123 "chromInfo": "\"/tmp/tmpk1dzvi78/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", | |
| 124 "dbkey": "\"?\"", | |
| 125 "json_use": "{\"__current_case__\": 0, \"annotation_columns\": \"annotation\", \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\", \"fragment_column\": \"fragment\", \"sequence_column\": \"sequence\", \"table\": \"sample\", \"use_json_paramers\": false}" | |
| 126 }, | |
| 127 "state": "ok", | |
| 128 "stderr": "", | |
| 129 "stdout": "Connected to database.\n", | |
| 130 "tool_id": "seq_form_db", | |
| 131 "tool_stderr": "", | |
| 132 "tool_stdout": "Connected to database.\n", | |
| 133 "update_time": "2025-09-03T14:06:07.610997", | |
| 134 "user_email": "planemo@galaxyproject.org", | |
| 135 "user_id": "4a322b718ac1c0e2" | |
| 136 }, | |
| 137 "status": "success", | |
| 138 "test_index": 0, | |
| 139 "time_seconds": 17.504873752593994, | |
| 140 "tool_id": "seq_form_db", | |
| 141 "tool_version": "0.3.0+galaxy2" | |
| 142 }, | |
| 143 "has_data": true, | |
| 144 "id": "seq_form_db-0" | |
| 145 }, | |
| 146 { | |
| 147 "data": { | |
| 148 "inputs": { | |
| 149 "input": { | |
| 150 "id": "7a3ba500dfe34f7d", | |
| 151 "src": "hda" | |
| 152 }, | |
| 153 "json_use|json_conf": { | |
| 154 "id": "2342ce89d5e1ece0", | |
| 155 "src": "hda" | |
| 156 }, | |
| 157 "json_use|use_json_paramers": true | |
| 158 }, | |
| 159 "job": { | |
| 160 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/seq_from_db/get_db_info.py' --input '/tmp/tmpk1dzvi78/files/4/2/c/dataset_42c93e52-005a-4165-b3c9-ad6a994555b6.dat' --use_json_paramers 'true' --json_conf '/tmp/tmpk1dzvi78/files/b/f/8/dataset_bf8fdbb1-ad99-4618-95c0-95a8c77b0b33.dat' --output 'outdir' --report '/tmp/tmpk1dzvi78/job_working_directory/000/5/outputs/dataset_e887b8ce-78bc-411c-9e9a-2473e4f5c094.dat'", | |
| 161 "command_version": "", | |
| 162 "copied_from_job_id": null, | |
| 163 "create_time": "2025-09-03T14:06:18.140280", | |
| 164 "dependencies": [ | |
| 165 { | |
| 166 "cacheable": false, | |
| 167 "dependency_resolver": { | |
| 168 "auto_init": true, | |
| 169 "auto_install": true, | |
| 170 "can_uninstall_dependencies": true, | |
| 171 "ensure_channels": "conda-forge,bioconda", | |
| 172 "model_class": "CondaDependencyResolver", | |
| 173 "prefix": "/home/rkhaled/miniconda3", | |
| 174 "read_only": false, | |
| 175 "resolver_type": "conda", | |
| 176 "resolves_simple_dependencies": true, | |
| 177 "use_local": false, | |
| 178 "versionless": false | |
| 179 }, | |
| 180 "dependency_type": "conda", | |
| 181 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 182 "exact": true, | |
| 183 "model_class": "MergedCondaDependency", | |
| 184 "name": "pandas", | |
| 185 "version": "2.2.3" | |
| 186 }, | |
| 187 { | |
| 188 "cacheable": false, | |
| 189 "dependency_resolver": { | |
| 190 "auto_init": true, | |
| 191 "auto_install": true, | |
| 192 "can_uninstall_dependencies": true, | |
| 193 "ensure_channels": "conda-forge,bioconda", | |
| 194 "model_class": "CondaDependencyResolver", | |
| 195 "prefix": "/home/rkhaled/miniconda3", | |
| 196 "read_only": false, | |
| 197 "resolver_type": "conda", | |
| 198 "resolves_simple_dependencies": true, | |
| 199 "use_local": false, | |
| 200 "versionless": false | |
| 201 }, | |
| 202 "dependency_type": "conda", | |
| 203 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 204 "exact": true, | |
| 205 "model_class": "MergedCondaDependency", | |
| 206 "name": "sqlalchemy", | |
| 207 "version": "2.0.40" | |
| 208 }, | |
| 209 { | |
| 210 "cacheable": false, | |
| 211 "dependency_resolver": { | |
| 212 "auto_init": true, | |
| 213 "auto_install": true, | |
| 214 "can_uninstall_dependencies": true, | |
| 215 "ensure_channels": "conda-forge,bioconda", | |
| 216 "model_class": "CondaDependencyResolver", | |
| 217 "prefix": "/home/rkhaled/miniconda3", | |
| 218 "read_only": false, | |
| 219 "resolver_type": "conda", | |
| 220 "resolves_simple_dependencies": true, | |
| 221 "use_local": false, | |
| 222 "versionless": false | |
| 223 }, | |
| 224 "dependency_type": "conda", | |
| 225 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 226 "exact": true, | |
| 227 "model_class": "MergedCondaDependency", | |
| 228 "name": "psycopg2", | |
| 229 "version": "2.9.9" | |
| 230 }, | |
| 231 { | |
| 232 "cacheable": false, | |
| 233 "dependency_resolver": { | |
| 234 "auto_init": true, | |
| 235 "auto_install": true, | |
| 236 "can_uninstall_dependencies": true, | |
| 237 "ensure_channels": "conda-forge,bioconda", | |
| 238 "model_class": "CondaDependencyResolver", | |
| 239 "prefix": "/home/rkhaled/miniconda3", | |
| 240 "read_only": false, | |
| 241 "resolver_type": "conda", | |
| 242 "resolves_simple_dependencies": true, | |
| 243 "use_local": false, | |
| 244 "versionless": false | |
| 245 }, | |
| 246 "dependency_type": "conda", | |
| 247 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 248 "exact": true, | |
| 249 "model_class": "MergedCondaDependency", | |
| 250 "name": "biopython", | |
| 251 "version": "1.85" | |
| 252 } | |
| 253 ], | |
| 254 "exit_code": 0, | |
| 255 "external_id": "272369", | |
| 256 "galaxy_version": "25.0", | |
| 257 "handler": null, | |
| 258 "history_id": "1989000e072b2636", | |
| 259 "id": "c5357eb6f97cf3a5", | |
| 260 "inputs": { | |
| 261 "input": { | |
| 262 "id": "7a3ba500dfe34f7d", | |
| 263 "src": "hda", | |
| 264 "uuid": "42c93e52-005a-4165-b3c9-ad6a994555b6" | |
| 265 }, | |
| 266 "json_use|json_conf": { | |
| 267 "id": "2342ce89d5e1ece0", | |
| 268 "src": "hda", | |
| 269 "uuid": "bf8fdbb1-ad99-4618-95c0-95a8c77b0b33" | |
| 270 } | |
| 271 }, | |
| 272 "job_messages": [], | |
| 273 "job_metrics": [], | |
| 274 "job_runner_name": null, | |
| 275 "job_stderr": "", | |
| 276 "job_stdout": "", | |
| 277 "model_class": "Job", | |
| 278 "output_collections": { | |
| 279 "output_gb": { | |
| 280 "id": "1989000e072b2636", | |
| 281 "src": "hdca" | |
| 282 } | |
| 283 }, | |
| 284 "outputs": { | |
| 285 "__new_primary_file_output_gb|part_A__": { | |
| 286 "id": "f394728818c80166", | |
| 287 "src": "hda", | |
| 288 "uuid": "19041da0-45ff-4db0-9bdf-e1eb94a3de9c" | |
| 289 }, | |
| 290 "__new_primary_file_output_gb|part_B__": { | |
| 291 "id": "52f9738c52d71add", | |
| 292 "src": "hda", | |
| 293 "uuid": "1cea35c9-2e1a-4530-a4a8-8ac6ab701dd6" | |
| 294 }, | |
| 295 "__new_primary_file_output_gb|part_C__": { | |
| 296 "id": "4d25ad106c51aa39", | |
| 297 "src": "hda", | |
| 298 "uuid": "1aefcb36-873a-4f8b-8334-72944b0005cc" | |
| 299 }, | |
| 300 "__new_primary_file_output_gb|part_D__": { | |
| 301 "id": "18327568d4bfb713", | |
| 302 "src": "hda", | |
| 303 "uuid": "adfb6464-890d-4290-87aa-9e1cd1d38e3a" | |
| 304 }, | |
| 305 "__new_primary_file_output_gb|part_E__": { | |
| 306 "id": "b14c4ac77e02861d", | |
| 307 "src": "hda", | |
| 308 "uuid": "7661cb69-0144-46d0-85bd-67209435c6d6" | |
| 309 }, | |
| 310 "__new_primary_file_output_gb|part_F__": { | |
| 311 "id": "fbcce7623ce509c3", | |
| 312 "src": "hda", | |
| 313 "uuid": "caa63f6e-fcdd-4db0-94ec-163eb99cf951" | |
| 314 }, | |
| 315 "__new_primary_file_output_gb|part_G__": { | |
| 316 "id": "b45bf4103f92de93", | |
| 317 "src": "hda", | |
| 318 "uuid": "022c0929-72b8-40cf-856d-4e0122870189" | |
| 319 }, | |
| 320 "__new_primary_file_output_gb|part_H__": { | |
| 321 "id": "625b69a5a3f1f991", | |
| 322 "src": "hda", | |
| 323 "uuid": "d4268ea2-1eeb-48e7-89d2-2e294c2c1f25" | |
| 324 }, | |
| 325 "__new_primary_file_output_gb|part_I__": { | |
| 326 "id": "5209a97a0fe3ef8b", | |
| 327 "src": "hda", | |
| 328 "uuid": "89216149-2aca-476e-b634-f92b068456e5" | |
| 329 }, | |
| 330 "__new_primary_file_output_gb|part_J__": { | |
| 331 "id": "f689ddd78b4ec51a", | |
| 332 "src": "hda", | |
| 333 "uuid": "613d05b1-f2d4-4f62-949d-70097f93ef45" | |
| 334 }, | |
| 335 "__new_primary_file_output_gb|part_K__": { | |
| 336 "id": "9a581e904ebd5f69", | |
| 337 "src": "hda", | |
| 338 "uuid": "7bcf43ea-5415-4410-87ad-c5d86be7c443" | |
| 339 }, | |
| 340 "__new_primary_file_output_gb|part_L__": { | |
| 341 "id": "619f8666158da0a0", | |
| 342 "src": "hda", | |
| 343 "uuid": "880b0003-bc95-45e9-b7a8-cc86a2055f57" | |
| 344 }, | |
| 345 "report": { | |
| 346 "id": "1475f84309e6efdc", | |
| 347 "src": "hda", | |
| 348 "uuid": "e887b8ce-78bc-411c-9e9a-2473e4f5c094" | |
| 349 } | |
| 350 }, | |
| 351 "params": { | |
| 352 "__input_ext": "\"input\"", | |
| 353 "chromInfo": "\"/tmp/tmpk1dzvi78/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", | |
| 354 "dbkey": "\"?\"", | |
| 355 "json_use": "{\"__current_case__\": 1, \"json_conf\": {\"values\": [{\"id\": 16, \"src\": \"hda\"}]}, \"use_json_paramers\": true}" | |
| 356 }, | |
| 357 "state": "ok", | |
| 358 "stderr": "", | |
| 359 "stdout": "Connected to database.\n", | |
| 360 "tool_id": "seq_form_db", | |
| 361 "tool_stderr": "", | |
| 362 "tool_stdout": "Connected to database.\n", | |
| 363 "update_time": "2025-09-03T14:06:25.140121", | |
| 364 "user_email": "planemo@galaxyproject.org", | |
| 365 "user_id": "4a322b718ac1c0e2" | |
| 366 }, | |
| 367 "status": "success", | |
| 368 "test_index": 1, | |
| 369 "time_seconds": 17.440069437026978, | |
| 370 "tool_id": "seq_form_db", | |
| 371 "tool_version": "0.3.0+galaxy2" | |
| 372 }, | |
| 373 "has_data": true, | |
| 374 "id": "seq_form_db-1" | |
| 375 }, | |
| 376 { | |
| 377 "data": { | |
| 378 "inputs": { | |
| 379 "input": { | |
| 380 "id": "4c3f7df96ce49d27", | |
| 381 "src": "hda" | |
| 382 }, | |
| 383 "json_use|annotation_columns": "annotation", | |
| 384 "json_use|db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", | |
| 385 "json_use|fragment_column": "fragment", | |
| 386 "json_use|sequence_column": "sequence", | |
| 387 "json_use|table": "sample", | |
| 388 "json_use|use_json_paramers": false | |
| 389 }, | |
| 390 "job": { | |
| 391 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/seq_from_db/get_db_info.py' --input '/tmp/tmpk1dzvi78/files/9/b/a/dataset_9ba7c27f-7f63-48f9-82df-f0ffa32fe875.dat' --use_json_paramers 'false' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir' --report '/tmp/tmpk1dzvi78/job_working_directory/000/7/outputs/dataset_2099de02-84b6-464f-a603-26ec7fd84555.dat'", | |
| 392 "command_version": "", | |
| 393 "copied_from_job_id": null, | |
| 394 "create_time": "2025-09-03T14:06:35.187563", | |
| 395 "dependencies": [ | |
| 396 { | |
| 397 "cacheable": false, | |
| 398 "dependency_resolver": { | |
| 399 "auto_init": true, | |
| 400 "auto_install": true, | |
| 401 "can_uninstall_dependencies": true, | |
| 402 "ensure_channels": "conda-forge,bioconda", | |
| 403 "model_class": "CondaDependencyResolver", | |
| 404 "prefix": "/home/rkhaled/miniconda3", | |
| 405 "read_only": false, | |
| 406 "resolver_type": "conda", | |
| 407 "resolves_simple_dependencies": true, | |
| 408 "use_local": false, | |
| 409 "versionless": false | |
| 410 }, | |
| 411 "dependency_type": "conda", | |
| 412 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 413 "exact": true, | |
| 414 "model_class": "MergedCondaDependency", | |
| 415 "name": "pandas", | |
| 416 "version": "2.2.3" | |
| 417 }, | |
| 418 { | |
| 419 "cacheable": false, | |
| 420 "dependency_resolver": { | |
| 421 "auto_init": true, | |
| 422 "auto_install": true, | |
| 423 "can_uninstall_dependencies": true, | |
| 424 "ensure_channels": "conda-forge,bioconda", | |
| 425 "model_class": "CondaDependencyResolver", | |
| 426 "prefix": "/home/rkhaled/miniconda3", | |
| 427 "read_only": false, | |
| 428 "resolver_type": "conda", | |
| 429 "resolves_simple_dependencies": true, | |
| 430 "use_local": false, | |
| 431 "versionless": false | |
| 432 }, | |
| 433 "dependency_type": "conda", | |
| 434 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 435 "exact": true, | |
| 436 "model_class": "MergedCondaDependency", | |
| 437 "name": "sqlalchemy", | |
| 438 "version": "2.0.40" | |
| 439 }, | |
| 440 { | |
| 441 "cacheable": false, | |
| 442 "dependency_resolver": { | |
| 443 "auto_init": true, | |
| 444 "auto_install": true, | |
| 445 "can_uninstall_dependencies": true, | |
| 446 "ensure_channels": "conda-forge,bioconda", | |
| 447 "model_class": "CondaDependencyResolver", | |
| 448 "prefix": "/home/rkhaled/miniconda3", | |
| 449 "read_only": false, | |
| 450 "resolver_type": "conda", | |
| 451 "resolves_simple_dependencies": true, | |
| 452 "use_local": false, | |
| 453 "versionless": false | |
| 454 }, | |
| 455 "dependency_type": "conda", | |
| 456 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 457 "exact": true, | |
| 458 "model_class": "MergedCondaDependency", | |
| 459 "name": "psycopg2", | |
| 460 "version": "2.9.9" | |
| 461 }, | |
| 462 { | |
| 463 "cacheable": false, | |
| 464 "dependency_resolver": { | |
| 465 "auto_init": true, | |
| 466 "auto_install": true, | |
| 467 "can_uninstall_dependencies": true, | |
| 468 "ensure_channels": "conda-forge,bioconda", | |
| 469 "model_class": "CondaDependencyResolver", | |
| 470 "prefix": "/home/rkhaled/miniconda3", | |
| 471 "read_only": false, | |
| 472 "resolver_type": "conda", | |
| 473 "resolves_simple_dependencies": true, | |
| 474 "use_local": false, | |
| 475 "versionless": false | |
| 476 }, | |
| 477 "dependency_type": "conda", | |
| 478 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1", | |
| 479 "exact": true, | |
| 480 "model_class": "MergedCondaDependency", | |
| 481 "name": "biopython", | |
| 482 "version": "1.85" | |
| 483 } | |
| 484 ], | |
| 485 "exit_code": 0, | |
| 486 "external_id": "272614", | |
| 487 "galaxy_version": "25.0", | |
| 488 "handler": null, | |
| 489 "history_id": "692a3006cb4bc1fb", | |
| 490 "id": "23e4ed60bee4a4b3", | |
| 491 "inputs": { | |
| 492 "input": { | |
| 493 "id": "4c3f7df96ce49d27", | |
| 494 "src": "hda", | |
| 495 "uuid": "9ba7c27f-7f63-48f9-82df-f0ffa32fe875" | |
| 496 } | |
| 497 }, | |
| 498 "job_messages": [], | |
| 499 "job_metrics": [], | |
| 500 "job_runner_name": null, | |
| 501 "job_stderr": "", | |
| 502 "job_stdout": "", | |
| 503 "model_class": "Job", | |
| 504 "output_collections": { | |
| 505 "output_gb": { | |
| 506 "id": "692a3006cb4bc1fb", | |
| 507 "src": "hdca" | |
| 508 } | |
| 509 }, | |
| 510 "outputs": { | |
| 511 "__new_primary_file_output_gb|part_A__": { | |
| 512 "id": "9b676d2a6fac5122", | |
| 513 "src": "hda", | |
| 514 "uuid": "e4cbafe5-d29f-423a-8d0f-6251c8a1b861" | |
| 515 }, | |
| 516 "__new_primary_file_output_gb|part_B__": { | |
| 517 "id": "6408e022581bd85a", | |
| 518 "src": "hda", | |
| 519 "uuid": "d6a1ef9b-5407-4166-8b2d-dc9add921f8d" | |
| 520 }, | |
| 521 "__new_primary_file_output_gb|part_C__": { | |
| 522 "id": "146b9743658be563", | |
| 523 "src": "hda", | |
| 524 "uuid": "1d58408c-1c4d-4b13-8e60-7551bb2d033e" | |
| 525 }, | |
| 526 "__new_primary_file_output_gb|part_D__": { | |
| 527 "id": "d04b3965e2c7c627", | |
| 528 "src": "hda", | |
| 529 "uuid": "277c9e3f-b008-47f9-9c27-feded9a8c000" | |
| 530 }, | |
| 531 "__new_primary_file_output_gb|part_E__": { | |
| 532 "id": "5171793c10a10766", | |
| 533 "src": "hda", | |
| 534 "uuid": "80e12f72-1dc8-4b72-b93f-bb899aedb134" | |
| 535 }, | |
| 536 "__new_primary_file_output_gb|part_F__": { | |
| 537 "id": "4a9fd232cf6f8097", | |
| 538 "src": "hda", | |
| 539 "uuid": "f8f33f16-72d1-43cb-9b59-9591026646f2" | |
| 540 }, | |
| 541 "__new_primary_file_output_gb|part_G__": { | |
| 542 "id": "74e6cbe048c63d70", | |
| 543 "src": "hda", | |
| 544 "uuid": "c0acfcfd-504c-434a-b9f9-6d6683dd5c3c" | |
| 545 }, | |
| 546 "__new_primary_file_output_gb|part_H__": { | |
| 547 "id": "ca3637e630bf95c2", | |
| 548 "src": "hda", | |
| 549 "uuid": "01803f35-1b7f-44f5-bf0e-ff133082eb1f" | |
| 550 }, | |
| 551 "__new_primary_file_output_gb|part_I__": { | |
| 552 "id": "8c369d98999df6bc", | |
| 553 "src": "hda", | |
| 554 "uuid": "df4b8de1-4e8f-467a-8361-567b4d53dbcc" | |
| 555 }, | |
| 556 "__new_primary_file_output_gb|part_J__": { | |
| 557 "id": "0ba9e9781a802f97", | |
| 558 "src": "hda", | |
| 559 "uuid": "d054d23e-5d67-4ec2-a0cf-5bb61a7693be" | |
| 560 }, | |
| 561 "__new_primary_file_output_gb|part_K__": { | |
| 562 "id": "1cd3d77f4e0bb87b", | |
| 563 "src": "hda", | |
| 564 "uuid": "a3dbb7ee-3c64-49b4-b024-e92178c9c52b" | |
| 565 }, | |
| 566 "__new_primary_file_output_gb|part_L__": { | |
| 567 "id": "fc7f2bf0d5edf8ad", | |
| 568 "src": "hda", | |
| 569 "uuid": "cb4b9a89-166d-4d35-9b20-6e06c71ff3fc" | |
| 570 }, | |
| 571 "report": { | |
| 572 "id": "cc9ee5a2b3669654", | |
| 573 "src": "hda", | |
| 574 "uuid": "2099de02-84b6-464f-a603-26ec7fd84555" | |
| 575 } | |
| 576 }, | |
| 577 "params": { | |
| 578 "__input_ext": "\"input\"", | |
| 579 "chromInfo": "\"/tmp/tmpk1dzvi78/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", | |
| 580 "dbkey": "\"?\"", | |
| 581 "json_use": "{\"__current_case__\": 0, \"annotation_columns\": \"annotation\", \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\", \"fragment_column\": \"fragment\", \"sequence_column\": \"sequence\", \"table\": \"sample\", \"use_json_paramers\": false}" | |
| 582 }, | |
| 583 "state": "ok", | |
| 584 "stderr": "", | |
| 585 "stdout": "Connected to database.\n", | |
| 586 "tool_id": "seq_form_db", | |
| 587 "tool_stderr": "", | |
| 588 "tool_stdout": "Connected to database.\n", | |
| 589 "update_time": "2025-09-03T14:06:41.527586", | |
| 590 "user_email": "planemo@galaxyproject.org", | |
| 591 "user_id": "4a322b718ac1c0e2" | |
| 592 }, | |
| 593 "status": "success", | |
| 594 "test_index": 2, | |
| 595 "time_seconds": 16.304288148880005, | |
| 596 "tool_id": "seq_form_db", | |
| 597 "tool_version": "0.3.0+galaxy2" | |
| 598 }, | |
| 599 "has_data": true, | |
| 600 "id": "seq_form_db-2" | |
| 601 } | |
| 602 ], | |
| 603 "version": "0.1" | |
| 604 } |
