comparison output.json @ 2:3bb9bbecae97 draft default tip

planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools commit 767392e3136912fa30d1e0786eba789dd77d722c-dirty
author tduigou
date Wed, 03 Sep 2025 14:07:14 +0000
parents
children
comparison
equal deleted inserted replaced
1:54e716c11b71 2:3bb9bbecae97
1 {
2 "summary": {
3 "num_errors": 0,
4 "num_failures": 0,
5 "num_skips": 0,
6 "num_tests": 3
7 },
8 "tests": [
9 {
10 "data": {
11 "inputs": {
12 "input": {
13 "id": "4a322b718ac1c0e2",
14 "src": "hda"
15 },
16 "json_use|annotation_columns": "annotation",
17 "json_use|db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
18 "json_use|fragment_column": "fragment",
19 "json_use|sequence_column": "sequence",
20 "json_use|table": "sample",
21 "json_use|use_json_paramers": false
22 },
23 "job": {
24 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/seq_from_db/get_db_info.py' --input '/tmp/tmpk1dzvi78/files/c/1/9/dataset_c19fee65-2ddf-471a-97f2-745ff33b2e2b.dat' --use_json_paramers 'false' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir' --report '/tmp/tmpk1dzvi78/job_working_directory/000/2/outputs/dataset_a220a67a-7465-433f-bf6b-8982cbe6f6c0.dat'",
25 "command_version": "",
26 "copied_from_job_id": null,
27 "create_time": "2025-09-03T14:06:00.424294",
28 "dependencies": [],
29 "exit_code": 0,
30 "external_id": "272095",
31 "galaxy_version": "25.0",
32 "handler": null,
33 "history_id": "4a322b718ac1c0e2",
34 "id": "1989000e072b2636",
35 "inputs": {
36 "input": {
37 "id": "4a322b718ac1c0e2",
38 "src": "hda",
39 "uuid": "c19fee65-2ddf-471a-97f2-745ff33b2e2b"
40 }
41 },
42 "job_messages": [],
43 "job_metrics": [],
44 "job_runner_name": null,
45 "job_stderr": "",
46 "job_stdout": "",
47 "model_class": "Job",
48 "output_collections": {
49 "output_gb": {
50 "id": "4a322b718ac1c0e2",
51 "src": "hdca"
52 }
53 },
54 "outputs": {
55 "__new_primary_file_output_gb|part_A__": {
56 "id": "692a3006cb4bc1fb",
57 "src": "hda",
58 "uuid": "9d1fe7c4-5dec-4419-b058-dc8b5ca2b484"
59 },
60 "__new_primary_file_output_gb|part_B__": {
61 "id": "5bb9f161ccdcbe3d",
62 "src": "hda",
63 "uuid": "a33008d7-817a-48f9-8dfb-eabb78b76674"
64 },
65 "__new_primary_file_output_gb|part_C__": {
66 "id": "c5357eb6f97cf3a5",
67 "src": "hda",
68 "uuid": "d2344e99-b844-43a2-a0aa-bd49fad9717b"
69 },
70 "__new_primary_file_output_gb|part_D__": {
71 "id": "293d1ae40cf22fe6",
72 "src": "hda",
73 "uuid": "05d7eecf-949d-480b-91c1-9d9c47794e09"
74 },
75 "__new_primary_file_output_gb|part_E__": {
76 "id": "23e4ed60bee4a4b3",
77 "src": "hda",
78 "uuid": "62ecbf87-c2a9-48bd-b4fd-7335e1c02dbf"
79 },
80 "__new_primary_file_output_gb|part_F__": {
81 "id": "79412812e9269933",
82 "src": "hda",
83 "uuid": "40e8c7bf-123b-474a-b428-b898dd08381c"
84 },
85 "__new_primary_file_output_gb|part_G__": {
86 "id": "6d16ab9a203f56a3",
87 "src": "hda",
88 "uuid": "27e54c95-e5d5-45d3-bc9d-2850e0a1341e"
89 },
90 "__new_primary_file_output_gb|part_H__": {
91 "id": "283353e9143f5274",
92 "src": "hda",
93 "uuid": "f59a445a-e4c8-4f15-a878-7c25849d9b46"
94 },
95 "__new_primary_file_output_gb|part_I__": {
96 "id": "e3c978da9b8df39e",
97 "src": "hda",
98 "uuid": "f37c3fd1-2d0e-4f41-94ac-6c85d3ee9508"
99 },
100 "__new_primary_file_output_gb|part_J__": {
101 "id": "12cc97427ff4fb0f",
102 "src": "hda",
103 "uuid": "14b3409c-2557-4d34-9872-f9f02b1e9b4a"
104 },
105 "__new_primary_file_output_gb|part_K__": {
106 "id": "92d876d39ec93068",
107 "src": "hda",
108 "uuid": "3b9deade-0417-4fab-b51f-0c6ae5f54ab5"
109 },
110 "__new_primary_file_output_gb|part_L__": {
111 "id": "93db475889f8ba12",
112 "src": "hda",
113 "uuid": "2309a76c-c8ae-4123-a227-f4b6e2ffac42"
114 },
115 "report": {
116 "id": "1989000e072b2636",
117 "src": "hda",
118 "uuid": "a220a67a-7465-433f-bf6b-8982cbe6f6c0"
119 }
120 },
121 "params": {
122 "__input_ext": "\"input\"",
123 "chromInfo": "\"/tmp/tmpk1dzvi78/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
124 "dbkey": "\"?\"",
125 "json_use": "{\"__current_case__\": 0, \"annotation_columns\": \"annotation\", \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\", \"fragment_column\": \"fragment\", \"sequence_column\": \"sequence\", \"table\": \"sample\", \"use_json_paramers\": false}"
126 },
127 "state": "ok",
128 "stderr": "",
129 "stdout": "Connected to database.\n",
130 "tool_id": "seq_form_db",
131 "tool_stderr": "",
132 "tool_stdout": "Connected to database.\n",
133 "update_time": "2025-09-03T14:06:07.610997",
134 "user_email": "planemo@galaxyproject.org",
135 "user_id": "4a322b718ac1c0e2"
136 },
137 "status": "success",
138 "test_index": 0,
139 "time_seconds": 17.504873752593994,
140 "tool_id": "seq_form_db",
141 "tool_version": "0.3.0+galaxy2"
142 },
143 "has_data": true,
144 "id": "seq_form_db-0"
145 },
146 {
147 "data": {
148 "inputs": {
149 "input": {
150 "id": "7a3ba500dfe34f7d",
151 "src": "hda"
152 },
153 "json_use|json_conf": {
154 "id": "2342ce89d5e1ece0",
155 "src": "hda"
156 },
157 "json_use|use_json_paramers": true
158 },
159 "job": {
160 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/seq_from_db/get_db_info.py' --input '/tmp/tmpk1dzvi78/files/4/2/c/dataset_42c93e52-005a-4165-b3c9-ad6a994555b6.dat' --use_json_paramers 'true' --json_conf '/tmp/tmpk1dzvi78/files/b/f/8/dataset_bf8fdbb1-ad99-4618-95c0-95a8c77b0b33.dat' --output 'outdir' --report '/tmp/tmpk1dzvi78/job_working_directory/000/5/outputs/dataset_e887b8ce-78bc-411c-9e9a-2473e4f5c094.dat'",
161 "command_version": "",
162 "copied_from_job_id": null,
163 "create_time": "2025-09-03T14:06:18.140280",
164 "dependencies": [
165 {
166 "cacheable": false,
167 "dependency_resolver": {
168 "auto_init": true,
169 "auto_install": true,
170 "can_uninstall_dependencies": true,
171 "ensure_channels": "conda-forge,bioconda",
172 "model_class": "CondaDependencyResolver",
173 "prefix": "/home/rkhaled/miniconda3",
174 "read_only": false,
175 "resolver_type": "conda",
176 "resolves_simple_dependencies": true,
177 "use_local": false,
178 "versionless": false
179 },
180 "dependency_type": "conda",
181 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
182 "exact": true,
183 "model_class": "MergedCondaDependency",
184 "name": "pandas",
185 "version": "2.2.3"
186 },
187 {
188 "cacheable": false,
189 "dependency_resolver": {
190 "auto_init": true,
191 "auto_install": true,
192 "can_uninstall_dependencies": true,
193 "ensure_channels": "conda-forge,bioconda",
194 "model_class": "CondaDependencyResolver",
195 "prefix": "/home/rkhaled/miniconda3",
196 "read_only": false,
197 "resolver_type": "conda",
198 "resolves_simple_dependencies": true,
199 "use_local": false,
200 "versionless": false
201 },
202 "dependency_type": "conda",
203 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
204 "exact": true,
205 "model_class": "MergedCondaDependency",
206 "name": "sqlalchemy",
207 "version": "2.0.40"
208 },
209 {
210 "cacheable": false,
211 "dependency_resolver": {
212 "auto_init": true,
213 "auto_install": true,
214 "can_uninstall_dependencies": true,
215 "ensure_channels": "conda-forge,bioconda",
216 "model_class": "CondaDependencyResolver",
217 "prefix": "/home/rkhaled/miniconda3",
218 "read_only": false,
219 "resolver_type": "conda",
220 "resolves_simple_dependencies": true,
221 "use_local": false,
222 "versionless": false
223 },
224 "dependency_type": "conda",
225 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
226 "exact": true,
227 "model_class": "MergedCondaDependency",
228 "name": "psycopg2",
229 "version": "2.9.9"
230 },
231 {
232 "cacheable": false,
233 "dependency_resolver": {
234 "auto_init": true,
235 "auto_install": true,
236 "can_uninstall_dependencies": true,
237 "ensure_channels": "conda-forge,bioconda",
238 "model_class": "CondaDependencyResolver",
239 "prefix": "/home/rkhaled/miniconda3",
240 "read_only": false,
241 "resolver_type": "conda",
242 "resolves_simple_dependencies": true,
243 "use_local": false,
244 "versionless": false
245 },
246 "dependency_type": "conda",
247 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
248 "exact": true,
249 "model_class": "MergedCondaDependency",
250 "name": "biopython",
251 "version": "1.85"
252 }
253 ],
254 "exit_code": 0,
255 "external_id": "272369",
256 "galaxy_version": "25.0",
257 "handler": null,
258 "history_id": "1989000e072b2636",
259 "id": "c5357eb6f97cf3a5",
260 "inputs": {
261 "input": {
262 "id": "7a3ba500dfe34f7d",
263 "src": "hda",
264 "uuid": "42c93e52-005a-4165-b3c9-ad6a994555b6"
265 },
266 "json_use|json_conf": {
267 "id": "2342ce89d5e1ece0",
268 "src": "hda",
269 "uuid": "bf8fdbb1-ad99-4618-95c0-95a8c77b0b33"
270 }
271 },
272 "job_messages": [],
273 "job_metrics": [],
274 "job_runner_name": null,
275 "job_stderr": "",
276 "job_stdout": "",
277 "model_class": "Job",
278 "output_collections": {
279 "output_gb": {
280 "id": "1989000e072b2636",
281 "src": "hdca"
282 }
283 },
284 "outputs": {
285 "__new_primary_file_output_gb|part_A__": {
286 "id": "f394728818c80166",
287 "src": "hda",
288 "uuid": "19041da0-45ff-4db0-9bdf-e1eb94a3de9c"
289 },
290 "__new_primary_file_output_gb|part_B__": {
291 "id": "52f9738c52d71add",
292 "src": "hda",
293 "uuid": "1cea35c9-2e1a-4530-a4a8-8ac6ab701dd6"
294 },
295 "__new_primary_file_output_gb|part_C__": {
296 "id": "4d25ad106c51aa39",
297 "src": "hda",
298 "uuid": "1aefcb36-873a-4f8b-8334-72944b0005cc"
299 },
300 "__new_primary_file_output_gb|part_D__": {
301 "id": "18327568d4bfb713",
302 "src": "hda",
303 "uuid": "adfb6464-890d-4290-87aa-9e1cd1d38e3a"
304 },
305 "__new_primary_file_output_gb|part_E__": {
306 "id": "b14c4ac77e02861d",
307 "src": "hda",
308 "uuid": "7661cb69-0144-46d0-85bd-67209435c6d6"
309 },
310 "__new_primary_file_output_gb|part_F__": {
311 "id": "fbcce7623ce509c3",
312 "src": "hda",
313 "uuid": "caa63f6e-fcdd-4db0-94ec-163eb99cf951"
314 },
315 "__new_primary_file_output_gb|part_G__": {
316 "id": "b45bf4103f92de93",
317 "src": "hda",
318 "uuid": "022c0929-72b8-40cf-856d-4e0122870189"
319 },
320 "__new_primary_file_output_gb|part_H__": {
321 "id": "625b69a5a3f1f991",
322 "src": "hda",
323 "uuid": "d4268ea2-1eeb-48e7-89d2-2e294c2c1f25"
324 },
325 "__new_primary_file_output_gb|part_I__": {
326 "id": "5209a97a0fe3ef8b",
327 "src": "hda",
328 "uuid": "89216149-2aca-476e-b634-f92b068456e5"
329 },
330 "__new_primary_file_output_gb|part_J__": {
331 "id": "f689ddd78b4ec51a",
332 "src": "hda",
333 "uuid": "613d05b1-f2d4-4f62-949d-70097f93ef45"
334 },
335 "__new_primary_file_output_gb|part_K__": {
336 "id": "9a581e904ebd5f69",
337 "src": "hda",
338 "uuid": "7bcf43ea-5415-4410-87ad-c5d86be7c443"
339 },
340 "__new_primary_file_output_gb|part_L__": {
341 "id": "619f8666158da0a0",
342 "src": "hda",
343 "uuid": "880b0003-bc95-45e9-b7a8-cc86a2055f57"
344 },
345 "report": {
346 "id": "1475f84309e6efdc",
347 "src": "hda",
348 "uuid": "e887b8ce-78bc-411c-9e9a-2473e4f5c094"
349 }
350 },
351 "params": {
352 "__input_ext": "\"input\"",
353 "chromInfo": "\"/tmp/tmpk1dzvi78/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
354 "dbkey": "\"?\"",
355 "json_use": "{\"__current_case__\": 1, \"json_conf\": {\"values\": [{\"id\": 16, \"src\": \"hda\"}]}, \"use_json_paramers\": true}"
356 },
357 "state": "ok",
358 "stderr": "",
359 "stdout": "Connected to database.\n",
360 "tool_id": "seq_form_db",
361 "tool_stderr": "",
362 "tool_stdout": "Connected to database.\n",
363 "update_time": "2025-09-03T14:06:25.140121",
364 "user_email": "planemo@galaxyproject.org",
365 "user_id": "4a322b718ac1c0e2"
366 },
367 "status": "success",
368 "test_index": 1,
369 "time_seconds": 17.440069437026978,
370 "tool_id": "seq_form_db",
371 "tool_version": "0.3.0+galaxy2"
372 },
373 "has_data": true,
374 "id": "seq_form_db-1"
375 },
376 {
377 "data": {
378 "inputs": {
379 "input": {
380 "id": "4c3f7df96ce49d27",
381 "src": "hda"
382 },
383 "json_use|annotation_columns": "annotation",
384 "json_use|db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
385 "json_use|fragment_column": "fragment",
386 "json_use|sequence_column": "sequence",
387 "json_use|table": "sample",
388 "json_use|use_json_paramers": false
389 },
390 "job": {
391 "command_line": "mkdir 'outdir' && python '/home/rkhaled/galaxytools/tools/seq_from_db/get_db_info.py' --input '/tmp/tmpk1dzvi78/files/9/b/a/dataset_9ba7c27f-7f63-48f9-82df-f0ffa32fe875.dat' --use_json_paramers 'false' --sequence_column 'sequence' --annotation_columns 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output 'outdir' --report '/tmp/tmpk1dzvi78/job_working_directory/000/7/outputs/dataset_2099de02-84b6-464f-a603-26ec7fd84555.dat'",
392 "command_version": "",
393 "copied_from_job_id": null,
394 "create_time": "2025-09-03T14:06:35.187563",
395 "dependencies": [
396 {
397 "cacheable": false,
398 "dependency_resolver": {
399 "auto_init": true,
400 "auto_install": true,
401 "can_uninstall_dependencies": true,
402 "ensure_channels": "conda-forge,bioconda",
403 "model_class": "CondaDependencyResolver",
404 "prefix": "/home/rkhaled/miniconda3",
405 "read_only": false,
406 "resolver_type": "conda",
407 "resolves_simple_dependencies": true,
408 "use_local": false,
409 "versionless": false
410 },
411 "dependency_type": "conda",
412 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
413 "exact": true,
414 "model_class": "MergedCondaDependency",
415 "name": "pandas",
416 "version": "2.2.3"
417 },
418 {
419 "cacheable": false,
420 "dependency_resolver": {
421 "auto_init": true,
422 "auto_install": true,
423 "can_uninstall_dependencies": true,
424 "ensure_channels": "conda-forge,bioconda",
425 "model_class": "CondaDependencyResolver",
426 "prefix": "/home/rkhaled/miniconda3",
427 "read_only": false,
428 "resolver_type": "conda",
429 "resolves_simple_dependencies": true,
430 "use_local": false,
431 "versionless": false
432 },
433 "dependency_type": "conda",
434 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
435 "exact": true,
436 "model_class": "MergedCondaDependency",
437 "name": "sqlalchemy",
438 "version": "2.0.40"
439 },
440 {
441 "cacheable": false,
442 "dependency_resolver": {
443 "auto_init": true,
444 "auto_install": true,
445 "can_uninstall_dependencies": true,
446 "ensure_channels": "conda-forge,bioconda",
447 "model_class": "CondaDependencyResolver",
448 "prefix": "/home/rkhaled/miniconda3",
449 "read_only": false,
450 "resolver_type": "conda",
451 "resolves_simple_dependencies": true,
452 "use_local": false,
453 "versionless": false
454 },
455 "dependency_type": "conda",
456 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
457 "exact": true,
458 "model_class": "MergedCondaDependency",
459 "name": "psycopg2",
460 "version": "2.9.9"
461 },
462 {
463 "cacheable": false,
464 "dependency_resolver": {
465 "auto_init": true,
466 "auto_install": true,
467 "can_uninstall_dependencies": true,
468 "ensure_channels": "conda-forge,bioconda",
469 "model_class": "CondaDependencyResolver",
470 "prefix": "/home/rkhaled/miniconda3",
471 "read_only": false,
472 "resolver_type": "conda",
473 "resolves_simple_dependencies": true,
474 "use_local": false,
475 "versionless": false
476 },
477 "dependency_type": "conda",
478 "environment_path": "/home/rkhaled/miniconda3/envs/mulled-v1-ceb490c4aa844ebbe7d57435fac907dbf01ddab1023bddca4355753f079716f1",
479 "exact": true,
480 "model_class": "MergedCondaDependency",
481 "name": "biopython",
482 "version": "1.85"
483 }
484 ],
485 "exit_code": 0,
486 "external_id": "272614",
487 "galaxy_version": "25.0",
488 "handler": null,
489 "history_id": "692a3006cb4bc1fb",
490 "id": "23e4ed60bee4a4b3",
491 "inputs": {
492 "input": {
493 "id": "4c3f7df96ce49d27",
494 "src": "hda",
495 "uuid": "9ba7c27f-7f63-48f9-82df-f0ffa32fe875"
496 }
497 },
498 "job_messages": [],
499 "job_metrics": [],
500 "job_runner_name": null,
501 "job_stderr": "",
502 "job_stdout": "",
503 "model_class": "Job",
504 "output_collections": {
505 "output_gb": {
506 "id": "692a3006cb4bc1fb",
507 "src": "hdca"
508 }
509 },
510 "outputs": {
511 "__new_primary_file_output_gb|part_A__": {
512 "id": "9b676d2a6fac5122",
513 "src": "hda",
514 "uuid": "e4cbafe5-d29f-423a-8d0f-6251c8a1b861"
515 },
516 "__new_primary_file_output_gb|part_B__": {
517 "id": "6408e022581bd85a",
518 "src": "hda",
519 "uuid": "d6a1ef9b-5407-4166-8b2d-dc9add921f8d"
520 },
521 "__new_primary_file_output_gb|part_C__": {
522 "id": "146b9743658be563",
523 "src": "hda",
524 "uuid": "1d58408c-1c4d-4b13-8e60-7551bb2d033e"
525 },
526 "__new_primary_file_output_gb|part_D__": {
527 "id": "d04b3965e2c7c627",
528 "src": "hda",
529 "uuid": "277c9e3f-b008-47f9-9c27-feded9a8c000"
530 },
531 "__new_primary_file_output_gb|part_E__": {
532 "id": "5171793c10a10766",
533 "src": "hda",
534 "uuid": "80e12f72-1dc8-4b72-b93f-bb899aedb134"
535 },
536 "__new_primary_file_output_gb|part_F__": {
537 "id": "4a9fd232cf6f8097",
538 "src": "hda",
539 "uuid": "f8f33f16-72d1-43cb-9b59-9591026646f2"
540 },
541 "__new_primary_file_output_gb|part_G__": {
542 "id": "74e6cbe048c63d70",
543 "src": "hda",
544 "uuid": "c0acfcfd-504c-434a-b9f9-6d6683dd5c3c"
545 },
546 "__new_primary_file_output_gb|part_H__": {
547 "id": "ca3637e630bf95c2",
548 "src": "hda",
549 "uuid": "01803f35-1b7f-44f5-bf0e-ff133082eb1f"
550 },
551 "__new_primary_file_output_gb|part_I__": {
552 "id": "8c369d98999df6bc",
553 "src": "hda",
554 "uuid": "df4b8de1-4e8f-467a-8361-567b4d53dbcc"
555 },
556 "__new_primary_file_output_gb|part_J__": {
557 "id": "0ba9e9781a802f97",
558 "src": "hda",
559 "uuid": "d054d23e-5d67-4ec2-a0cf-5bb61a7693be"
560 },
561 "__new_primary_file_output_gb|part_K__": {
562 "id": "1cd3d77f4e0bb87b",
563 "src": "hda",
564 "uuid": "a3dbb7ee-3c64-49b4-b024-e92178c9c52b"
565 },
566 "__new_primary_file_output_gb|part_L__": {
567 "id": "fc7f2bf0d5edf8ad",
568 "src": "hda",
569 "uuid": "cb4b9a89-166d-4d35-9b20-6e06c71ff3fc"
570 },
571 "report": {
572 "id": "cc9ee5a2b3669654",
573 "src": "hda",
574 "uuid": "2099de02-84b6-464f-a603-26ec7fd84555"
575 }
576 },
577 "params": {
578 "__input_ext": "\"input\"",
579 "chromInfo": "\"/tmp/tmpk1dzvi78/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
580 "dbkey": "\"?\"",
581 "json_use": "{\"__current_case__\": 0, \"annotation_columns\": \"annotation\", \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\", \"fragment_column\": \"fragment\", \"sequence_column\": \"sequence\", \"table\": \"sample\", \"use_json_paramers\": false}"
582 },
583 "state": "ok",
584 "stderr": "",
585 "stdout": "Connected to database.\n",
586 "tool_id": "seq_form_db",
587 "tool_stderr": "",
588 "tool_stdout": "Connected to database.\n",
589 "update_time": "2025-09-03T14:06:41.527586",
590 "user_email": "planemo@galaxyproject.org",
591 "user_id": "4a322b718ac1c0e2"
592 },
593 "status": "success",
594 "test_index": 2,
595 "time_seconds": 16.304288148880005,
596 "tool_id": "seq_form_db",
597 "tool_version": "0.3.0+galaxy2"
598 },
599 "has_data": true,
600 "id": "seq_form_db-2"
601 }
602 ],
603 "version": "0.1"
604 }