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comparison sbol3_diff.xml @ 0:2d9ed070ea20 draft

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planemo upload commit ce400589f51221295c59294ed462bb82220f4654-dirty
author tduigou
date Mon, 19 Dec 2022 10:11:28 +0000
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1 <tool id="sbol3_diff" name="SBOL3 DIFF" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
2 <description>Computes the difference between two SBOL3 documents</description>
3 <macros>
4 <token name="@VERSION_SUFFIX@">0</token>
5 <token name="@TOOL_VERSION@">1.0a16</token>
6 </macros>
7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">sbol-utilities</requirement>
9 </requirements>
10 <stdio>
11 <exit_code range="2:" level="fatal" />
12 <exit_code range="0" level="warning" description="No differences detected" />
13 <exit_code range="1" level="warning" description="Differences detected" />
14 </stdio>
15 <command><![CDATA[
16 ln -s '$sbol3_in_1' '$sbol3_in_1.name' &&
17 ln -s '$sbol3_in_2' '$sbol3_in_2.name' &&
18 sbol-diff '$sbol3_in_1.name' '$sbol3_in_2.name' > '$diff_out'
19 ]]></command>
20 <inputs>
21 <param name="sbol3_in_1" type="data" format="nt" label="First input SBOL3" />
22 <param name="sbol3_in_2" type="data" format="nt" label="Second input SBOL3" />
23 </inputs>
24 <outputs>
25 <data name="diff_out" format="txt" label="${tool.name}: ${sbol3_in_1.name} - ${sbol3_in_2.name}"/>
26 </outputs>
27 <tests>
28 <test>
29 <!-- test 1: check if identical output is produced -->
30 <param name="sbol3_in_1" value="simple_library.nt" />
31 <param name="sbol3_in_2" value="expanded_simple_library.nt" />
32 <output name="diff_out" file="sbol3_diff_out.txt" ftype="txt" compare="diff" sort="true"/>
33 </test>
34 </tests>
35 <help><![CDATA[
36 SBOL3 DIFF
37 ================
38
39 Input
40 -----
41
42 Required:
43
44 * **First input SBOL3**\
45 * **Second input SBOL3**\
46
47 Output
48 ------
49
50 * **Output**\ : Output with differences between two SBOL3 files.
51
52 Project Links
53 ------------------
54
55 * `GitHub <https://github.com/SynBioDex/SBOL-utilities>`_
56
57 License
58 -------
59
60 * `MIT <https://github.com/SynBioDex/SBOL-utilities/blob/develop/LICENSE.txt>`_
61
62 Acknowledgments
63 ---------------
64
65 * Kenza BAZI-KABBAJ
66
67 ]]></help>
68 <creator>
69 <person givenName="Jacob" familyName="Beal" identifier="https://orcid.org/0000-0002-1663-5102" />
70 </creator>
71 </tool>