--- a/output.json	Fri May 16 09:34:35 2025 +0000
+++ b/output.json	Fri May 23 08:51:50 2025 +0000
@@ -12,73 +12,50 @@
                     "annotation_column": "annotation",
                     "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
                     "fragment_column": "fragment",
-                    "genbank_files": [
-                        {
-                            "id": "0ed824750a9f5374",
-                            "src": "hda"
-                        },
-                        {
-                            "id": "93c5e169024bda92",
-                            "src": "hda"
-                        },
-                        {
-                            "id": "7e79446a5abd8b5f",
-                            "src": "hda"
-                        },
-                        {
-                            "id": "81603bca0e110055",
-                            "src": "hda"
-                        },
-                        {
-                            "id": "f1c08c8102faa4bc",
-                            "src": "hda"
-                        }
-                    ],
+                    "genbank_files": {
+                        "id": "aaa4852d508c750d",
+                        "src": "hdca"
+                    },
                     "sequence_column": "sequence",
                     "table": "sample"
                 },
                 "job": {
-                    "command_line": "python '/home/rkhaled/galaxytools/tools/save_to_db/save_to_db.py' --input '/tmp/tmp_mv7gt3c/files/5/2/2/dataset_5228856a-39be-4f27-afa9-d1f613dea185.dat,/tmp/tmp_mv7gt3c/files/f/a/a/dataset_faa1d0aa-2bb0-47c0-bc3e-949253dd5c3c.dat,/tmp/tmp_mv7gt3c/files/9/6/1/dataset_961fe859-a187-4b45-98ac-bc9c8bd29463.dat,/tmp/tmp_mv7gt3c/files/a/5/c/dataset_a5c56d98-0435-435b-ad8a-01906b2ab961.dat,/tmp/tmp_mv7gt3c/files/2/a/7/dataset_2a788c0d-f89d-4961-95c4-423fd51249f0.dat' --sequence_column 'sequence' --annotation_column 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output '/tmp/tmp_mv7gt3c/job_working_directory/000/6/outputs/dataset_c2d55cf8-9c51-42f9-84da-9aa06323c7ce.dat' --file_name_mapping '/tmp/tmp_mv7gt3c/files/5/2/2/dataset_5228856a-39be-4f27-afa9-d1f613dea185.dat:p7_L7Ae-Weiss.gb,/tmp/tmp_mv7gt3c/files/f/a/a/dataset_faa1d0aa-2bb0-47c0-bc3e-949253dd5c3c.dat:p6_Nt-IgKLsequence.gb,/tmp/tmp_mv7gt3c/files/9/6/1/dataset_961fe859-a187-4b45-98ac-bc9c8bd29463.dat:p6_Kozak-ATG.gb,/tmp/tmp_mv7gt3c/files/a/5/c/dataset_a5c56d98-0435-435b-ad8a-01906b2ab961.dat:p4_Kt-L7Ae-Weiss.gb,/tmp/tmp_mv7gt3c/files/2/a/7/dataset_2a788c0d-f89d-4961-95c4-423fd51249f0.dat:HC_Amp_ccdB.gb'",
+                    "command_line": "python '/home/rkhaled/galaxytools/tools/save_to_db/save_to_db.py' --input '/tmp/tmp4fafueqc/files/c/4/e/dataset_c4ecd213-c62a-48fe-bfd4-f2eb1c1c6439.dat,/tmp/tmp4fafueqc/files/d/2/d/dataset_d2d9d592-9f6a-488b-b911-e2c122dc898f.dat,/tmp/tmp4fafueqc/files/3/7/a/dataset_37a5bcbb-3cf1-45ae-a439-588268402c0b.dat,/tmp/tmp4fafueqc/files/9/d/d/dataset_9dd9b73e-eb2c-460a-b612-86cc1f86f9b6.dat,/tmp/tmp4fafueqc/files/e/7/e/dataset_e7e7bd21-36d3-4e84-9177-2451bfcc09e7.dat' --sequence_column 'sequence' --annotation_column 'annotation' --db_uri 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db' --table 'sample' --fragment_column 'fragment' --output '/tmp/tmp4fafueqc/job_working_directory/000/6/outputs/dataset_fdf114e7-4317-491d-8e29-85accf371db7.dat' --file_name_mapping '/tmp/tmp4fafueqc/files/c/4/e/dataset_c4ecd213-c62a-48fe-bfd4-f2eb1c1c6439.dat:p7_L7Ae-Weiss.gb,/tmp/tmp4fafueqc/files/d/2/d/dataset_d2d9d592-9f6a-488b-b911-e2c122dc898f.dat:p6_Nt-IgKLsequence.gb,/tmp/tmp4fafueqc/files/3/7/a/dataset_37a5bcbb-3cf1-45ae-a439-588268402c0b.dat:p6_Kozak-ATG.gb,/tmp/tmp4fafueqc/files/9/d/d/dataset_9dd9b73e-eb2c-460a-b612-86cc1f86f9b6.dat:p4_Kt-L7Ae-Weiss.gb,/tmp/tmp4fafueqc/files/e/7/e/dataset_e7e7bd21-36d3-4e84-9177-2451bfcc09e7.dat:HC_Amp_ccdB.gb'",
                     "command_version": "",
                     "copied_from_job_id": null,
-                    "create_time": "2025-04-24T09:49:34.459208",
+                    "create_time": "2025-05-23T08:51:13.261313",
                     "dependencies": [],
                     "exit_code": 0,
-                    "external_id": "84720",
+                    "external_id": "53981",
                     "galaxy_version": "24.2",
                     "handler": null,
-                    "history_id": "0ed824750a9f5374",
-                    "id": "016b212ed10ed695",
+                    "history_id": "aaa4852d508c750d",
+                    "id": "42220a2e87c70ae5",
                     "inputs": {
-                        "genbank_files": {
-                            "id": "0ed824750a9f5374",
+                        "genbank_files1": {
+                            "id": "aaa4852d508c750d",
                             "src": "hda",
-                            "uuid": "5228856a-39be-4f27-afa9-d1f613dea185"
-                        },
-                        "genbank_files1": {
-                            "id": "0ed824750a9f5374",
-                            "src": "hda",
-                            "uuid": "5228856a-39be-4f27-afa9-d1f613dea185"
+                            "uuid": "c4ecd213-c62a-48fe-bfd4-f2eb1c1c6439"
                         },
                         "genbank_files2": {
-                            "id": "93c5e169024bda92",
+                            "id": "6139eb08ad8af00a",
                             "src": "hda",
-                            "uuid": "faa1d0aa-2bb0-47c0-bc3e-949253dd5c3c"
+                            "uuid": "d2d9d592-9f6a-488b-b911-e2c122dc898f"
                         },
                         "genbank_files3": {
-                            "id": "7e79446a5abd8b5f",
+                            "id": "cda565c89999ccf5",
                             "src": "hda",
-                            "uuid": "961fe859-a187-4b45-98ac-bc9c8bd29463"
+                            "uuid": "37a5bcbb-3cf1-45ae-a439-588268402c0b"
                         },
                         "genbank_files4": {
-                            "id": "81603bca0e110055",
+                            "id": "f072bab19666d9bc",
                             "src": "hda",
-                            "uuid": "a5c56d98-0435-435b-ad8a-01906b2ab961"
+                            "uuid": "9dd9b73e-eb2c-460a-b612-86cc1f86f9b6"
                         },
                         "genbank_files5": {
-                            "id": "f1c08c8102faa4bc",
+                            "id": "ede1fe394bce0b73",
                             "src": "hda",
-                            "uuid": "2a788c0d-f89d-4961-95c4-423fd51249f0"
+                            "uuid": "e7e7bd21-36d3-4e84-9177-2451bfcc09e7"
                         }
                     },
                     "job_messages": [],
@@ -90,36 +67,37 @@
                     "output_collections": {},
                     "outputs": {
                         "output": {
-                            "id": "016b212ed10ed695",
+                            "id": "42220a2e87c70ae5",
                             "src": "hda",
-                            "uuid": "c2d55cf8-9c51-42f9-84da-9aa06323c7ce"
+                            "uuid": "fdf114e7-4317-491d-8e29-85accf371db7"
                         }
                     },
                     "params": {
                         "__input_ext": "\"input\"",
                         "annotation_column": "\"annotation\"",
-                        "chromInfo": "\"/tmp/tmp_mv7gt3c/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
+                        "chromInfo": "\"/tmp/tmp4fafueqc/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
                         "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
                         "dbkey": "\"?\"",
                         "fragment_column": "\"fragment\"",
+                        "genbank_files": "{\"values\": [{\"id\": 1, \"src\": \"hdca\"}]}",
                         "sequence_column": "\"sequence\"",
                         "table": "\"sample\""
                     },
                     "state": "ok",
                     "stderr": "",
-                    "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\nProcessing file: dataset_5228856a-39be-4f27-afa9-d1f613dea185.dat\nProcessing file: dataset_faa1d0aa-2bb0-47c0-bc3e-949253dd5c3c.dat\nProcessing file: dataset_961fe859-a187-4b45-98ac-bc9c8bd29463.dat\nProcessing file: dataset_a5c56d98-0435-435b-ad8a-01906b2ab961.dat\nProcessing file: dataset_2a788c0d-f89d-4961-95c4-423fd51249f0.dat\nInserted 5 fragments.\nFragment names written to '/tmp/tmp_mv7gt3c/job_working_directory/000/6/outputs/dataset_c2d55cf8-9c51-42f9-84da-9aa06323c7ce.dat'.\n",
+                    "stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\nProcessing file: dataset_c4ecd213-c62a-48fe-bfd4-f2eb1c1c6439.dat\nProcessing file: dataset_d2d9d592-9f6a-488b-b911-e2c122dc898f.dat\nProcessing file: dataset_37a5bcbb-3cf1-45ae-a439-588268402c0b.dat\nProcessing file: dataset_9dd9b73e-eb2c-460a-b612-86cc1f86f9b6.dat\nProcessing file: dataset_e7e7bd21-36d3-4e84-9177-2451bfcc09e7.dat\nInserted 5 fragments.\nFragment names written to '/tmp/tmp4fafueqc/job_working_directory/000/6/outputs/dataset_fdf114e7-4317-491d-8e29-85accf371db7.dat'.\n",
                     "tool_id": "save_to_db",
                     "tool_stderr": "",
-                    "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\nProcessing file: dataset_5228856a-39be-4f27-afa9-d1f613dea185.dat\nProcessing file: dataset_faa1d0aa-2bb0-47c0-bc3e-949253dd5c3c.dat\nProcessing file: dataset_961fe859-a187-4b45-98ac-bc9c8bd29463.dat\nProcessing file: dataset_a5c56d98-0435-435b-ad8a-01906b2ab961.dat\nProcessing file: dataset_2a788c0d-f89d-4961-95c4-423fd51249f0.dat\nInserted 5 fragments.\nFragment names written to '/tmp/tmp_mv7gt3c/job_working_directory/000/6/outputs/dataset_c2d55cf8-9c51-42f9-84da-9aa06323c7ce.dat'.\n",
-                    "update_time": "2025-04-24T09:49:41.678113",
+                    "tool_stdout": "Container 'test_fragments_db' is already running.\nConnected to database.\nProcessing file: dataset_c4ecd213-c62a-48fe-bfd4-f2eb1c1c6439.dat\nProcessing file: dataset_d2d9d592-9f6a-488b-b911-e2c122dc898f.dat\nProcessing file: dataset_37a5bcbb-3cf1-45ae-a439-588268402c0b.dat\nProcessing file: dataset_9dd9b73e-eb2c-460a-b612-86cc1f86f9b6.dat\nProcessing file: dataset_e7e7bd21-36d3-4e84-9177-2451bfcc09e7.dat\nInserted 5 fragments.\nFragment names written to '/tmp/tmp4fafueqc/job_working_directory/000/6/outputs/dataset_fdf114e7-4317-491d-8e29-85accf371db7.dat'.\n",
+                    "update_time": "2025-05-23T08:51:20.615309",
                     "user_email": "planemo@galaxyproject.org",
-                    "user_id": "0ed824750a9f5374"
+                    "user_id": "aaa4852d508c750d"
                 },
                 "status": "success",
                 "test_index": 0,
-                "time_seconds": 26.82854700088501,
+                "time_seconds": 28.753373384475708,
                 "tool_id": "save_to_db",
-                "tool_version": "0.1.0+galaxy0"
+                "tool_version": "0.1.0+galaxy1"
             },
             "has_data": true,
             "id": "save_to_db-0"