# HG changeset patch
# User tduigou
# Date 1651854316 0
# Node ID 9603ff31672610efd6c1ee61f98b070fb4780a6c
# Parent  2bdbcdb151acc8efd9b91b6f4288dc20337553bb
"planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty"

diff -r 2bdbcdb151ac -r 9603ff316726 rpbasicdesign.xml
--- a/rpbasicdesign.xml	Wed Mar 30 08:59:01 2022 +0000
+++ b/rpbasicdesign.xml	Fri May 06 16:25:16 2022 +0000
@@ -1,7 +1,7 @@
 <tool id="rpbasicdesign" name="BasicDesign" version="@TOOL_VERSION@" profile="21.09">
     <description>Build DNA-BOT input files from rpSBML</description>
     <macros>
-        <token name="@TOOL_VERSION@">1.0.1</token>
+        <token name="@TOOL_VERSION@">1.1.0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">rpbasicdesign</requirement>
@@ -21,6 +21,7 @@
         --o_dnabot_dir 'out/dnabot_in'
         $adv.sbol_output
         --max_enz_per_rxn $adv.max_enz_per_rxn
+        --max_gene_per_construct $adv.max_gene_per_construct
     ]]></command>
     <inputs>
         <param name="rpsbml_file" type="data" format="sbml" label="rpSBML file" help="SBML file from which enzymes UniProt IDs will be collected."/>
@@ -63,6 +64,7 @@
             <param argument="--cds_permutation" type="boolean" truevalue="--cds_permutation true" falsevalue="--cds_permutation false" checked="true" label="Perform CDS permutation?" help="Whether all combinations of CDS permutation should be built." />
             <param argument="--sbol_output" type="boolean" checked="false" truevalue="--o_sbol_dir out/sbol_export" falsevalue="" label="Output SBOL results?" help="Whether SBOL (Synthetic Biology Open Language) depictions of constructs should be outputted" />
             <param argument="--max_enz_per_rxn" type="integer" value="1" min="1" max="99" label="Maximum number of enyzme to consider per reaction." help="Maximum number of enyzme to consider per reaction. If more enzymes are available for a given reaction, then only the last one listed in the MIRIAM annotation section will be kept."/>
+            <param argument="--max_gene_per_construct" type="integer" value="3" min="1" max="10" label="Maximum number of genes per construct" help="If more genes are required, i.e. more reactions are described in the input SBML file, then the execution will failed."/>
         </section>
     </inputs>
     <outputs>
@@ -145,7 +147,8 @@
 * **Backbone part ID**\ : (string) part ID to be used as the backbone. Default: BASIC_SEVA_37_CmR-p15A.1.
 * **Sample size**\ : (int) Number of construct to generate. Default: 88.
 * **Perform CDS permutation?**\ : (boolean) Whether all combinations of CDS permutation should be built Default: true.
-* **Maximum number of enyzme to consider per reaction**\ : (int) Maximum number of enyzme to consider per reaction. If more enzymes are available for a given reaction, then only the last one listed in the MIRIAM annotation section will be kept. (Default: 1). 
+* **Maximum number of enyzme to consider per reaction**\ : (int) Maximum number of enyzme to consider per reaction. If more enzymes are available for a given reaction, then only the last one listed in the MIRIAM annotation section will be kept. (Default: 1).
+* **Maximum number of genes per construct**\ : (int) If more genes are required, i.e. more reactions are described in the input SBML file, then the execution will failed. (Default: 3).
 
 Output
 ------