{
    "summary": {
        "num_errors": 0,
        "num_failures": 0,
        "num_skips": 0,
        "num_tests": 2
    },
    "tests": [
        {
            "data": {
                "inputs": {
                    "annotation_column": "annotation",
                    "assembly_plan_name": "Type2sRestrictionAssembly",
                    "avoid_patterns": "BsaI_site             BsmBI_site             BbsI_site             SapI_site             8x1mer             5x3mer             9x2mer",
                    "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
                    "enzyme": "auto",
                    "execution": true,
                    "fragment_column": "fragment",
                    "gc_constraints": "mini=0.3, maxi=0.7, window=100             mini=0.1, maxi=0.9, window=100",
                    "hairpin_constraints": "stem_size=20, hairpin_window=200",
                    "kmer_size": "15",
                    "sequence_column": "sequence",
                    "table_name": "sample",
                    "topology": "circular"
                },
                "job": {
                    "command_line": "python3 -c \"import json; params = { 'avoid_patterns': 'BsaI_site             BsmBI_site             BbsI_site             SapI_site             8x1mer             5x3mer             9x2mer', 'hairpin_constraints': 'stem_size=20, hairpin_window=200', 'gc_constraints': 'mini=0.3, maxi=0.7, window=100             mini=0.1, maxi=0.9, window=100', 'kmer_size': '15', 'assembly_plan_name': 'Type2sRestrictionAssembly', 'topology': 'circular', 'enzyme': 'auto', 'execution': 'true', 'db_uri': 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db', 'table': 'sample', 'fragment_column': 'fragment', 'sequence_column': 'sequence', 'annotation_column': 'annotation' }; f = open('/tmp/tmpt0l5fyog/job_working_directory/000/1/outputs/dataset_1bfb5292-6b8f-4b66-9d74-cedaf9200451.dat', 'w'); json.dump(params, f, indent=4); f.close()\" && echo DEBG && cat '/tmp/tmpt0l5fyog/job_working_directory/000/1/outputs/dataset_1bfb5292-6b8f-4b66-9d74-cedaf9200451.dat' && echo DEBG && cat '/tmp/tmpt0l5fyog/job_working_directory/000/1/outputs/dataset_1bfb5292-6b8f-4b66-9d74-cedaf9200451.dat'",
                    "command_version": "",
                    "copied_from_job_id": null,
                    "create_time": "2025-07-31T08:57:00.548068",
                    "dependencies": [],
                    "exit_code": 0,
                    "external_id": "205407",
                    "galaxy_version": "25.0",
                    "handler": null,
                    "history_id": "57c9e3825b6e5989",
                    "id": "57c9e3825b6e5989",
                    "inputs": {},
                    "job_messages": [],
                    "job_metrics": [],
                    "job_runner_name": null,
                    "job_stderr": "",
                    "job_stdout": "",
                    "model_class": "Job",
                    "output_collections": {},
                    "outputs": {
                        "output_json": {
                            "id": "57c9e3825b6e5989",
                            "src": "hda",
                            "uuid": "1bfb5292-6b8f-4b66-9d74-cedaf9200451"
                        }
                    },
                    "params": {
                        "__input_ext": "\"input\"",
                        "annotation_column": "\"annotation\"",
                        "assembly_plan_name": "\"Type2sRestrictionAssembly\"",
                        "avoid_patterns": "\"BsaI_site             BsmBI_site             BbsI_site             SapI_site             8x1mer             5x3mer             9x2mer\"",
                        "chromInfo": "\"/tmp/tmpt0l5fyog/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
                        "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"",
                        "dbkey": "\"?\"",
                        "enzyme": "\"auto\"",
                        "execution": "true",
                        "fragment_column": "\"fragment\"",
                        "gc_constraints": "\"mini=0.3, maxi=0.7, window=100             mini=0.1, maxi=0.9, window=100\"",
                        "hairpin_constraints": "\"stem_size=20, hairpin_window=200\"",
                        "kmer_size": "\"15\"",
                        "sequence_column": "\"sequence\"",
                        "table_name": "\"sample\"",
                        "topology": "\"circular\"",
                        "user_json": null
                    },
                    "state": "ok",
                    "stderr": "",
                    "stdout": "DEBG\n{\n    \"avoid_patterns\": \"BsaI_site             BsmBI_site             BbsI_site             SapI_site             8x1mer             5x3mer             9x2mer\",\n    \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n    \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100             mini=0.1, maxi=0.9, window=100\",\n    \"kmer_size\": \"15\",\n    \"assembly_plan_name\": \"Type2sRestrictionAssembly\",\n    \"topology\": \"circular\",\n    \"enzyme\": \"auto\",\n    \"execution\": \"true\",\n    \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n    \"table\": \"sample\",\n    \"fragment_column\": \"fragment\",\n    \"sequence_column\": \"sequence\",\n    \"annotation_column\": \"annotation\"\n}DEBG\n{\n    \"avoid_patterns\": \"BsaI_site             BsmBI_site             BbsI_site             SapI_site             8x1mer             5x3mer             9x2mer\",\n    \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n    \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100             mini=0.1, maxi=0.9, window=100\",\n    \"kmer_size\": \"15\",\n    \"assembly_plan_name\": \"Type2sRestrictionAssembly\",\n    \"topology\": \"circular\",\n    \"enzyme\": \"auto\",\n    \"execution\": \"true\",\n    \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n    \"table\": \"sample\",\n    \"fragment_column\": \"fragment\",\n    \"sequence_column\": \"sequence\",\n    \"annotation_column\": \"annotation\"\n}",
                    "tool_id": "parameters_maystro_workflow_1",
                    "tool_stderr": "",
                    "tool_stdout": "DEBG\n{\n    \"avoid_patterns\": \"BsaI_site             BsmBI_site             BbsI_site             SapI_site             8x1mer             5x3mer             9x2mer\",\n    \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n    \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100             mini=0.1, maxi=0.9, window=100\",\n    \"kmer_size\": \"15\",\n    \"assembly_plan_name\": \"Type2sRestrictionAssembly\",\n    \"topology\": \"circular\",\n    \"enzyme\": \"auto\",\n    \"execution\": \"true\",\n    \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n    \"table\": \"sample\",\n    \"fragment_column\": \"fragment\",\n    \"sequence_column\": \"sequence\",\n    \"annotation_column\": \"annotation\"\n}DEBG\n{\n    \"avoid_patterns\": \"BsaI_site             BsmBI_site             BbsI_site             SapI_site             8x1mer             5x3mer             9x2mer\",\n    \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n    \"gc_constraints\": \"mini=0.3, maxi=0.7, window=100             mini=0.1, maxi=0.9, window=100\",\n    \"kmer_size\": \"15\",\n    \"assembly_plan_name\": \"Type2sRestrictionAssembly\",\n    \"topology\": \"circular\",\n    \"enzyme\": \"auto\",\n    \"execution\": \"true\",\n    \"db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n    \"table\": \"sample\",\n    \"fragment_column\": \"fragment\",\n    \"sequence_column\": \"sequence\",\n    \"annotation_column\": \"annotation\"\n}",
                    "update_time": "2025-07-31T08:57:06.352395",
                    "user_email": "planemo@galaxyproject.org",
                    "user_id": "57c9e3825b6e5989"
                },
                "status": "success",
                "test_index": 0,
                "time_seconds": 6.245003700256348,
                "tool_id": "parameters_maystro_workflow_1",
                "tool_version": "0.1.0"
            },
            "has_data": true,
            "id": "parameters_maystro_workflow_1-0"
        },
        {
            "data": {
                "inputs": {
                    "user_json": {
                        "id": "b8cd89e8131d3fe7",
                        "src": "hda"
                    }
                },
                "job": {
                    "command_line": "cp '/tmp/tmpt0l5fyog/files/d/7/9/dataset_d79830ca-f30e-4f82-8b67-150bf816c265.dat' '/tmp/tmpt0l5fyog/job_working_directory/000/3/outputs/dataset_cd60237f-3d8d-4a7e-ac4c-b10728db646e.dat' && echo DEBG && cat '/tmp/tmpt0l5fyog/job_working_directory/000/3/outputs/dataset_cd60237f-3d8d-4a7e-ac4c-b10728db646e.dat'",
                    "command_version": "",
                    "copied_from_job_id": null,
                    "create_time": "2025-07-31T08:57:16.707828",
                    "dependencies": [],
                    "exit_code": 0,
                    "external_id": "205636",
                    "galaxy_version": "25.0",
                    "handler": null,
                    "history_id": "b8cd89e8131d3fe7",
                    "id": "abe44dd8383948e0",
                    "inputs": {
                        "user_json": {
                            "id": "b8cd89e8131d3fe7",
                            "src": "hda",
                            "uuid": "d79830ca-f30e-4f82-8b67-150bf816c265"
                        }
                    },
                    "job_messages": [],
                    "job_metrics": [],
                    "job_runner_name": null,
                    "job_stderr": "",
                    "job_stdout": "",
                    "model_class": "Job",
                    "output_collections": {},
                    "outputs": {
                        "output_json": {
                            "id": "abe44dd8383948e0",
                            "src": "hda",
                            "uuid": "cd60237f-3d8d-4a7e-ac4c-b10728db646e"
                        }
                    },
                    "params": {
                        "__input_ext": "\"input\"",
                        "annotation_column": null,
                        "assembly_plan_name": "\"Type2sRestrictionAssembly\"",
                        "avoid_patterns": null,
                        "chromInfo": "\"/tmp/tmpt0l5fyog/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"",
                        "db_uri": null,
                        "dbkey": "\"?\"",
                        "enzyme": "\"auto\"",
                        "execution": "false",
                        "fragment_column": null,
                        "gc_constraints": null,
                        "hairpin_constraints": null,
                        "kmer_size": "\"\"",
                        "sequence_column": null,
                        "table_name": null,
                        "topology": "\"circular\""
                    },
                    "state": "ok",
                    "stderr": "",
                    "stdout": "DEBG\n{\n  \"avoid_patterns\": \"BsaI_site\\nBsmBI_site\\nBbsI_site\\nSapI_site\\n8x1mer\\n5x3mer\\n9x2mer\",\n  \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n  \"gc_constraints\": \"mini=0.1, maxi=0.9,, window=100\\nmini=0.3, maxi=0.7, window=100\",\n  \"kmer_size\": \"15\",\n  \"execution\": \"true\",\n  \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\",\n  \"table\": \"sample\",\n  \"fragment_column\": \"fragment\",\n  \"sequence_column\": \"sequence\",\n  \"annotation_column\": \"annotation\",\n  \"assembly_plan_name\": \"Type2sRestrictionAssembly\",\n  \"topology\": \"circular\",\n  \"enzyme\": \"auto\"\n}\n",
                    "tool_id": "parameters_maystro_workflow_1",
                    "tool_stderr": "",
                    "tool_stdout": "DEBG\n{\n  \"avoid_patterns\": \"BsaI_site\\nBsmBI_site\\nBbsI_site\\nSapI_site\\n8x1mer\\n5x3mer\\n9x2mer\",\n  \"hairpin_constraints\": \"stem_size=20, hairpin_window=200\",\n  \"gc_constraints\": \"mini=0.1, maxi=0.9,, window=100\\nmini=0.3, maxi=0.7, window=100\",\n  \"kmer_size\": \"15\",\n  \"execution\": \"true\",\n  \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\",\n  \"table\": \"sample\",\n  \"fragment_column\": \"fragment\",\n  \"sequence_column\": \"sequence\",\n  \"annotation_column\": \"annotation\",\n  \"assembly_plan_name\": \"Type2sRestrictionAssembly\",\n  \"topology\": \"circular\",\n  \"enzyme\": \"auto\"\n}\n",
                    "update_time": "2025-07-31T08:57:22.628561",
                    "user_email": "planemo@galaxyproject.org",
                    "user_id": "57c9e3825b6e5989"
                },
                "status": "success",
                "test_index": 1,
                "time_seconds": 15.919075965881348,
                "tool_id": "parameters_maystro_workflow_1",
                "tool_version": "0.1.0"
            },
            "has_data": true,
            "id": "parameters_maystro_workflow_1-1"
        }
    ],
    "version": "0.1"
}