Mercurial > repos > tduigou > json_db_config_generating
view output.json @ 5:40aa268ce07f draft default tip
planemo upload for repository https://github.com/brsynth commit 3401816c949b538bd9c67e61cbe92badff6a4007-dirty
| author | tduigou |
|---|---|
| date | Wed, 11 Jun 2025 16:00:37 +0000 |
| parents | 8eb6c417d4f5 |
| children |
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{ "summary": { "num_errors": 0, "num_failures": 0, "num_skips": 0, "num_tests": 2 }, "tests": [ { "data": { "inputs": { "db|db_request|db_config|annotation_column": "annotation", "db|db_request|db_config|db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", "db|db_request|db_config|fragment_column": "fragment", "db|db_request|db_config|sequence_column": "sequence", "db|db_request|db_config|table_name": "sample", "db|db_request|execution": true }, "job": { "command_line": "python3 -c \"import json; params = { 'execution': 'true', 'JSON_db_uri': 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db', 'JSON_table': 'sample', 'JSON_fragment_column': 'fragment', 'JSON_sequence_column': 'sequence', 'JSON_annotation_column': 'annotation' }; f = open('/tmp/tmpetlap50a/job_working_directory/000/1/outputs/dataset_adbe4688-ac5a-4157-9d00-bd44d8e5925a.dat', 'w'); json.dump(params, f, indent=4); f.close()\" && echo DEBUG && cat '/tmp/tmpetlap50a/job_working_directory/000/1/outputs/dataset_adbe4688-ac5a-4157-9d00-bd44d8e5925a.dat'", "command_version": "", "copied_from_job_id": null, "create_time": "2025-06-11T15:59:58.065310", "dependencies": [], "exit_code": 0, "external_id": "75561", "galaxy_version": "24.2", "handler": null, "history_id": "6ee26cd2a9b017f6", "id": "6ee26cd2a9b017f6", "inputs": {}, "job_messages": [], "job_metrics": [], "job_runner_name": null, "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_collections": {}, "outputs": { "output_json": { "id": "6ee26cd2a9b017f6", "src": "hda", "uuid": "adbe4688-ac5a-4157-9d00-bd44d8e5925a" } }, "params": { "__input_ext": "\"input\"", "chromInfo": "\"/tmp/tmpetlap50a/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "db": "{\"db_request\": {\"__current_case__\": 0, \"db_config\": {\"annotation_column\": \"annotation\", \"db_uri\": \"postgresql://postgres:RK17@localhost:5432/test_fragments_db\", \"fragment_column\": \"fragment\", \"sequence_column\": \"sequence\", \"table_name\": \"sample\"}, \"execution\": true}}", "dbkey": "\"?\"" }, "state": "ok", "stderr": "", "stdout": "DEBUG\n{\n \"execution\": \"true\",\n \"JSON_db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"JSON_table\": \"sample\",\n \"JSON_fragment_column\": \"fragment\",\n \"JSON_sequence_column\": \"sequence\",\n \"JSON_annotation_column\": \"annotation\"\n}", "tool_id": "json_db_config_generating", "tool_stderr": "", "tool_stdout": "DEBUG\n{\n \"execution\": \"true\",\n \"JSON_db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"JSON_table\": \"sample\",\n \"JSON_fragment_column\": \"fragment\",\n \"JSON_sequence_column\": \"sequence\",\n \"JSON_annotation_column\": \"annotation\"\n}", "update_time": "2025-06-11T16:00:13.304790", "user_email": "planemo@galaxyproject.org", "user_id": "6ee26cd2a9b017f6" }, "status": "success", "test_index": 0, "time_seconds": 15.370232105255127, "tool_id": "json_db_config_generating", "tool_version": "0.1.0+galaxy2" }, "has_data": true, "id": "json_db_config_generating-0" }, { "data": { "inputs": {}, "job": { "command_line": "python3 -c \"import json; params = { 'execution': 'false', 'JSON_db_uri': '', 'JSON_table': '', 'JSON_fragment_column': '', 'JSON_sequence_column': '', 'JSON_annotation_column': '' }; f = open('/tmp/tmpetlap50a/job_working_directory/000/2/outputs/dataset_c331c972-0356-4042-917b-f63fe99f938d.dat', 'w'); json.dump(params, f, indent=4); f.close()\" && echo DEBUG && cat '/tmp/tmpetlap50a/job_working_directory/000/2/outputs/dataset_c331c972-0356-4042-917b-f63fe99f938d.dat'", "command_version": "", "copied_from_job_id": null, "create_time": "2025-06-11T16:00:13.510772", "dependencies": [], "exit_code": 0, "external_id": "75631", "galaxy_version": "24.2", "handler": null, "history_id": "39ef7b54816acc5a", "id": "39ef7b54816acc5a", "inputs": {}, "job_messages": [], "job_metrics": [], "job_runner_name": null, "job_stderr": "", "job_stdout": "", "model_class": "Job", "output_collections": {}, "outputs": { "output_json": { "id": "39ef7b54816acc5a", "src": "hda", "uuid": "c331c972-0356-4042-917b-f63fe99f938d" } }, "params": { "__input_ext": "\"input\"", "chromInfo": "\"/tmp/tmpetlap50a/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", "db": "{\"db_request\": {\"__current_case__\": 1, \"db_config\": {\"annotation_column\": null, \"db_uri\": null, \"fragment_column\": null, \"sequence_column\": null, \"table_name\": null}, \"execution\": false}}", "dbkey": "\"?\"" }, "state": "ok", "stderr": "", "stdout": "DEBUG\n{\n \"execution\": \"false\",\n \"JSON_db_uri\": \"\",\n \"JSON_table\": \"\",\n \"JSON_fragment_column\": \"\",\n \"JSON_sequence_column\": \"\",\n \"JSON_annotation_column\": \"\"\n}", "tool_id": "json_db_config_generating", "tool_stderr": "", "tool_stdout": "DEBUG\n{\n \"execution\": \"false\",\n \"JSON_db_uri\": \"\",\n \"JSON_table\": \"\",\n \"JSON_fragment_column\": \"\",\n \"JSON_sequence_column\": \"\",\n \"JSON_annotation_column\": \"\"\n}", "update_time": "2025-06-11T16:00:19.478490", "user_email": "planemo@galaxyproject.org", "user_id": "6ee26cd2a9b017f6" }, "status": "success", "test_index": 1, "time_seconds": 6.3762428760528564, "tool_id": "json_db_config_generating", "tool_version": "0.1.0+galaxy2" }, "has_data": true, "id": "json_db_config_generating-1" } ], "version": "0.1" }
