Mercurial > repos > tduigou > json_db_config_generating
diff output.json @ 0:95757ea6c333 draft
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
| author | tduigou |
|---|---|
| date | Mon, 02 Jun 2025 13:39:41 +0000 |
| parents | |
| children | 2909e53fac5b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/output.json Mon Jun 02 13:39:41 2025 +0000 @@ -0,0 +1,145 @@ +{ + "summary": { + "num_errors": 0, + "num_failures": 0, + "num_skips": 0, + "num_tests": 2 + }, + "tests": [ + { + "data": { + "inputs": { + "annotation_column": "annotation", + "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", + "execution": true, + "fragment_column": "fragment", + "sequence_column": "sequence", + "table_name": "sample" + }, + "job": { + "command_line": "python3 -c \"import json; params = { 'execution': 'true', 'JSON_db_uri': 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db', 'JSON_table': 'sample', 'JSON_fragment_column': 'fragment', 'JSON_sequence_column': 'sequence', 'JSON_annotation_column': 'annotation' }; f = open('/tmp/tmphuox1me_/job_working_directory/000/1/outputs/dataset_a57d4381-ba51-4c7e-8409-1ec0f85d3ba2.dat', 'w'); json.dump(params, f, indent=4); f.close()\" && echo DEBUG && cat '/tmp/tmphuox1me_/job_working_directory/000/1/outputs/dataset_a57d4381-ba51-4c7e-8409-1ec0f85d3ba2.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-06-02T13:36:45.666819", + "dependencies": [], + "exit_code": 0, + "external_id": "240263", + "galaxy_version": "24.2", + "handler": null, + "history_id": "abb9783f010dde16", + "id": "abb9783f010dde16", + "inputs": {}, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "output_json": { + "id": "abb9783f010dde16", + "src": "hda", + "uuid": "a57d4381-ba51-4c7e-8409-1ec0f85d3ba2" + } + }, + "params": { + "__input_ext": "\"input\"", + "annotation_column": "\"annotation\"", + "chromInfo": "\"/tmp/tmphuox1me_/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"", + "dbkey": "\"?\"", + "execution": "true", + "fragment_column": "\"fragment\"", + "sequence_column": "\"sequence\"", + "table_name": "\"sample\"" + }, + "state": "ok", + "stderr": "", + "stdout": "DEBUG\n{\n \"execution\": \"true\",\n \"JSON_db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"JSON_table\": \"sample\",\n \"JSON_fragment_column\": \"fragment\",\n \"JSON_sequence_column\": \"sequence\",\n \"JSON_annotation_column\": \"annotation\"\n}", + "tool_id": "json_db_config_generating", + "tool_stderr": "", + "tool_stdout": "DEBUG\n{\n \"execution\": \"true\",\n \"JSON_db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"JSON_table\": \"sample\",\n \"JSON_fragment_column\": \"fragment\",\n \"JSON_sequence_column\": \"sequence\",\n \"JSON_annotation_column\": \"annotation\"\n}", + "update_time": "2025-06-02T13:36:51.468608", + "user_email": "planemo@galaxyproject.org", + "user_id": "abb9783f010dde16" + }, + "status": "success", + "test_index": 0, + "time_seconds": 6.098992109298706, + "tool_id": "json_db_config_generating", + "tool_version": "0.1.0+galaxy1" + }, + "has_data": true, + "id": "json_db_config_generating-0" + }, + { + "data": { + "inputs": { + "annotation_column": "annotation", + "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db", + "execution": false, + "fragment_column": "fragment", + "sequence_column": "sequence", + "table_name": "sample" + }, + "job": { + "command_line": "python3 -c \"import json; params = { 'execution': 'false', 'JSON_db_uri': 'postgresql://postgres:RK17__at__localhost:5432/test_fragments_db', 'JSON_table': 'sample', 'JSON_fragment_column': 'fragment', 'JSON_sequence_column': 'sequence', 'JSON_annotation_column': 'annotation' }; f = open('/tmp/tmphuox1me_/job_working_directory/000/2/outputs/dataset_b4d39c19-882f-4805-90ee-dbfd2dc51c44.dat', 'w'); json.dump(params, f, indent=4); f.close()\" && echo DEBUG && cat '/tmp/tmphuox1me_/job_working_directory/000/2/outputs/dataset_b4d39c19-882f-4805-90ee-dbfd2dc51c44.dat'", + "command_version": "", + "copied_from_job_id": null, + "create_time": "2025-06-02T13:36:51.893406", + "dependencies": [], + "exit_code": 0, + "external_id": "240333", + "galaxy_version": "24.2", + "handler": null, + "history_id": "e20768301a38397d", + "id": "e20768301a38397d", + "inputs": {}, + "job_messages": [], + "job_metrics": [], + "job_runner_name": null, + "job_stderr": "", + "job_stdout": "", + "model_class": "Job", + "output_collections": {}, + "outputs": { + "output_json": { + "id": "e20768301a38397d", + "src": "hda", + "uuid": "b4d39c19-882f-4805-90ee-dbfd2dc51c44" + } + }, + "params": { + "__input_ext": "\"input\"", + "annotation_column": "\"annotation\"", + "chromInfo": "\"/tmp/tmphuox1me_/galaxy-dev/tool-data/shared/ucsc/chrom/?.len\"", + "db_uri": "\"postgresql://postgres:RK17@localhost:5432/test_fragments_db\"", + "dbkey": "\"?\"", + "execution": "false", + "fragment_column": "\"fragment\"", + "sequence_column": "\"sequence\"", + "table_name": "\"sample\"" + }, + "state": "ok", + "stderr": "", + "stdout": "DEBUG\n{\n \"execution\": \"false\",\n \"JSON_db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"JSON_table\": \"sample\",\n \"JSON_fragment_column\": \"fragment\",\n \"JSON_sequence_column\": \"sequence\",\n \"JSON_annotation_column\": \"annotation\"\n}", + "tool_id": "json_db_config_generating", + "tool_stderr": "", + "tool_stdout": "DEBUG\n{\n \"execution\": \"false\",\n \"JSON_db_uri\": \"postgresql://postgres:RK17__at__localhost:5432/test_fragments_db\",\n \"JSON_table\": \"sample\",\n \"JSON_fragment_column\": \"fragment\",\n \"JSON_sequence_column\": \"sequence\",\n \"JSON_annotation_column\": \"annotation\"\n}", + "update_time": "2025-06-02T13:36:57.648501", + "user_email": "planemo@galaxyproject.org", + "user_id": "abb9783f010dde16" + }, + "status": "success", + "test_index": 1, + "time_seconds": 6.048913240432739, + "tool_id": "json_db_config_generating", + "tool_version": "0.1.0+galaxy1" + }, + "has_data": true, + "id": "json_db_config_generating-1" + } + ], + "version": "0.1" +} \ No newline at end of file