Mercurial > repos > tduigou > get_db_info

diff get_DB_data.xml @ 9:6401a277ee72 draft

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planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 18 Apr 2025 13:36:40 +0000
parents 87585c392228
children 703fda6c48c5
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line diff
--- a/get_DB_data.xml	Fri Apr 18 13:07:58 2025 +0000
+++ b/get_DB_data.xml	Fri Apr 18 13:36:40 2025 +0000
@@ -22,7 +22,7 @@
             --output 'outdir'
     ]]></command>
     <inputs> 
-        <param name="input" type="data" format="tabular" label="Input TSV file" />
+        <param name="input" type="data" format="csv" label="Input CSV file" />
         <param name="table" type="text" label="Database Table Name" optional="false" />
         <param name="sequence_column" type="text" label="DB column contains sequence for ganbank file" optional="false" />
         <param name="annotation_columns" type="text" label="DB column contains annotation for ganbank file" optional="false" />
@@ -37,7 +37,7 @@
     <tests>
     <!--python get_db_info.py -input 'test-data/test_input.tsv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output'-->
         <test> 
-            <param name="input" value="test_input.tsv" />
+            <param name="input" value="test_input.csv" />
             <param name="table" value="sample" />
             <param name="sequence_column" value="sequence" />
             <param name="annotation_columns" value="annotation" />
@@ -72,7 +72,7 @@
 Pick Data From DB
 ===================
 
-generate GanDank files from tsv file based on SQL DB.
+generate GanDank files from csv file based on SQL DB.
     ]]></help>
     <citations>
         <citation type="bibtex">