--- a/get_DB_data.xml	Fri Apr 18 09:57:55 2025 +0000
+++ b/get_DB_data.xml	Fri Apr 18 12:52:49 2025 +0000
@@ -20,7 +20,6 @@
             --table '$table' 
             --fragment_column '$fragment_column'
             --output 'outdir'
-            --output_missing '$output_missing'
     ]]></command>
     <inputs> 
         <param name="input" type="data" format="csv" label="Input CSV file" />
@@ -34,11 +33,9 @@
         <collection name="output_gb" type="list" label="GenBank Files collection" >
             <discover_datasets pattern="(?P&lt;name&gt;.*).gb" format="genbank" directory="outdir" />
         </collection>
-        <data name="output_missing" format="txt" label="DB Missing Fragments (txt)">
-        </data>
     </outputs>
     <tests>
-    <!--python get_db_info.py -input 'test-data/test_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output' -output_missing 'test-data/output.txt'-->
+    <!--python get_db_info.py -input 'test-data/test_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output'-->
         <test> 
             <param name="input" value="test_input.csv" />
             <param name="table" value="sample" />
@@ -69,23 +66,13 @@
                 </element>
             </output_collection>
         </test>
-     <!--python get_db_info.py -input 'test-data/test_missing_input.csv' -sequence_column 'sequence' -annotation_column 'annotation' -db_uri 'postgresql://postgres:RK17@localhost:5432/test_fragments_db' -table 'sample' -fragment_column 'fragment' -output 'test-data/output' -output_missing 'test-data/output.txt'-->
-        <test> 
-            <param name="input" value="test_missing_input.csv" />
-            <param name="table" value="sample" />
-            <param name="sequence_column" value="sequence" />
-            <param name="annotation_columns" value="annotation" />
-            <param name="fragment_column" value="fragment" />
-            <param name="db_uri" value="postgresql://postgres:RK17@localhost:5432/test_fragments_db" />
-            <output name="output_missing" file="output_annotations.txt" ftype="txt" />
-        </test>
     </tests>
     
     <help><![CDATA[
 Pick Data From DB
 ===================
 
-DBget data from SQL DB in docker container.
+generate GanDank files from csv file based on SQL DB.
     ]]></help>
     <citations>
         <citation type="bibtex">