Mercurial > repos > tduigou > get_db_info

comparison get_DB_data.xml @ 8:87585c392228 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/brsynth commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Fri, 18 Apr 2025 13:07:58 +0000
parents 8984fabea52c
children 6401a277ee72
comparison
equal deleted inserted replaced
7:8984fabea52c 8:87585c392228
20 --table '$table' 20 --table '$table'
21 --fragment_column '$fragment_column' 21 --fragment_column '$fragment_column'
22 --output 'outdir' 22 --output 'outdir'
23 ]]></command> 23 ]]></command>
24 <inputs> 24 <inputs>
25 <param name="input" type="data" format="tsv" label="Input TSV file" /> 25 <param name="input" type="data" format="tabular" label="Input TSV file" />
26 <param name="table" type="text" label="Database Table Name" optional="false" /> 26 <param name="table" type="text" label="Database Table Name" optional="false" />
27 <param name="sequence_column" type="text" label="DB column contains sequence for ganbank file" optional="false" /> 27 <param name="sequence_column" type="text" label="DB column contains sequence for ganbank file" optional="false" />
28 <param name="annotation_columns" type="text" label="DB column contains annotation for ganbank file" optional="false" /> 28 <param name="annotation_columns" type="text" label="DB column contains annotation for ganbank file" optional="false" />
29 <param name="fragment_column" type="text" label="Database Fragments Column Name" optional="false" /> 29 <param name="fragment_column" type="text" label="Database Fragments Column Name" optional="false" />
30 <param name="db_uri" type="text" label="Database Connection URI" help="postgresql+psycopg2://username:password@db_container_name:port/database" optional="false" /> 30 <param name="db_uri" type="text" label="Database Connection URI" help="postgresql+psycopg2://username:password@db_container_name:port/database" optional="false" />