Mercurial > repos > tduigou > domestication

diff domestication.xml @ 10:c52967fb95da draft default tip

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Tue, 27 May 2025 08:08:21 +0000
parents 450ed9dca5d5
children
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--- a/domestication.xml	Fri May 23 09:07:37 2025 +0000
+++ b/domestication.xml	Tue May 27 08:08:21 2025 +0000
@@ -30,7 +30,7 @@
             --output_gb_dom 'outdir_gb'
             --output_methprot 'metoutdir_gb'
             --methylation_protection '$methylation_protection' &&
-        cp 'output_zip.zip' '$output_zip'
+        cp 'output_zip.zip' '$domesticated_zip'
     ]]></command>
     <inputs>
         <param name="genbank_files" type="data_collection" collection_type="list" format="genbank" label="GenBank File(s)"/>
@@ -45,7 +45,7 @@
         </section>
     </inputs>   
     <outputs>
-        <data format="zip" name="output_zip" label="domestication results"/>
+        <data format="zip" name="domesticated_zip" label="domestication results"/>
         <collection name="domesticated_gb" type="list" label="Domesticated GenBank Files">
             <filter>methylation_protection == False</filter>
             <discover_datasets pattern="(?P&lt;name&gt;.*).gb" format="genbank" directory="outdir_gb" />
@@ -73,7 +73,7 @@
             <param name='methylation_protection' value='false' />
             <param name="adv|use_file_names_as_ids" value="True" />
             <param name="adv|allow_edits" value="True" />
-            <output name="output_zip" ftype='zip'>
+            <output name="domesticated_zip" ftype='zip'>
                 <assert_contents>
                     <has_archive_member path=".*" n="24"/>
                     <has_archive_member path="order_ids.csv">
@@ -136,7 +136,7 @@
             <param name="methylation_protection" value="true" />
             <param name="adv|use_file_names_as_ids" value="True" />
             <param name="adv|allow_edits" value="True" />
-            <output name="output_zip" ftype='zip'>
+            <output name="domesticated_zip" ftype='zip'>
                 <assert_contents>
                     <has_archive_member path=".*" n="24"/>
                     <has_archive_member path="order_ids.csv">