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diff domestication.xml @ 7:70895bec2486 draft

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planemo upload for repository https://github.com/Edinburgh-Genome-Foundry/Examples/blob/master/templates/template1.ipynb commit 6ae809b563b40bcdb6be2e74fe2a84ddad5484ae
author tduigou
date Mon, 19 May 2025 14:04:56 +0000
parents e0cda353d4cc
children 4bfdec0be6b1
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--- a/domestication.xml	Mon May 19 13:41:02 2025 +0000
+++ b/domestication.xml	Mon May 19 14:04:56 2025 +0000
@@ -19,9 +19,10 @@
         #set genbank_file_paths = ','.join([str(f) for f in $genbank_files])
         #set $file_name_mapping = ",".join(["%s:%s" % (file.file_name, file.name) for file in $genbank_files])
         mkdir 'metoutdir_gb' && mkdir 'outdir_zip' && mkdir 'outdir_gb'&&
+        cp '$domestication_csv' 'domestication_csv.csv' &&
         python '$__tool_directory__/domestication.py'
             --files_to_domestication '$genbank_file_paths'
-            --csv_file '$domestication_csv'
+            --csv_file 'domestication_csv.csv'
             --file_name_mapping '$file_name_mapping'
             --use_file_names_as_id '$adv.use_file_names_as_ids'
             --allow_edits '$adv.allow_edits'