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comparison predict.xml @ 2:9867542d5ddd draft default tip

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planemo upload for repository https://github.com/brsynth/damn_library commit e8c8f102cab10531ed588be4ecb8a0d01e797f09
author tduigou
date Fri, 06 Mar 2026 13:57:38 +0000
parents 8376f5c615ed
children
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1:8376f5c615ed 2:9867542d5ddd
81 <option value="growth" selected="true">Growth</option> 81 <option value="growth" selected="true">Growth</option>
82 <option value="substrate">Substrate</option> 82 <option value="substrate">Substrate</option>
83 </param> 83 </param>
84 </when> 84 </when>
85 </conditional> 85 </conditional>
86 <param name='file_name' type="text" label="File name" help="File name in the zip file (ex. 'putida_OD_81' for putida_OD_81_medium_val_ids.*)"/> 86 <param name='file_name' type="text" label="File name" help="File name in the zip file (ex. 'putida_OD_81' for putida_OD_81_medium_val_ids.*) they sould all start by the same file name"/>
87 <param name='train_test_split' type="select" label="Train-Test Split"> 87 <param name='train_test_split' type="select" label="Train-Test Split">
88 <option value="medium" selected="true">Medium</option> 88 <option value="medium" selected="true">Medium</option>
89 <option value="forecast">Forecast</option> 89 <option value="forecast">Forecast</option>
90 </param> 90 </param>
91 <param name='ods' type="boolean" label="Biomass concentration to OD" checked="True" help="when True biomass concentration transformed in OD"/> 91 <param name='ods' type="boolean" label="Biomass concentration to OD" checked="True" help="when True biomass concentration transformed in OD"/>
123 123
124 <help><![CDATA[ 124 <help><![CDATA[
125 dAMN Prediction 125 dAMN Prediction
126 ==================== 126 ====================
127 dAMN Hybrid Neural Network Framework for Dynamic Flux Balance Analysis (dFBA). This tool predict using Putida ans E.Coli models add to the option of a costumed model. 127 dAMN Hybrid Neural Network Framework for Dynamic Flux Balance Analysis (dFBA). This tool predict using Putida ans E.Coli models add to the option of a costumed model.
128
129 **Demo data**:
130 ---------------
131 `Zip Putida <https://github.com/brsynth/damn_library/blob/main/docs/putida/modul.zip>`_ (file name: putida_OD_81)
132
128 ]]></help> 133 ]]></help>
129 <citations> 134 <citations>
130 <citation type="bibtex"> 135 <citation type="bibtex">
131 @unpublished{damn_predict 136 @unpublished{damn_predict
132 author = {Ramiz Khaled}, 137 author = {Ramiz Khaled},